Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00154 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTCCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCTTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCAGAAGTTTCAAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCATGATATTACCAGCCAACCTGAGGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACCTCGGCTTGTTCGGGTAATTCAAGCTCGGAGGACATCTCTAGCAATGGAGTTCGTTGCCAGAATGACACGCCTCGAAATGACGTTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATACCCAAGCATGCTAGTTCAACTGGAATTAGAAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAAAAATGACGCATCCATGTCAGCAGACAAAGTTCGTTCATATGGGAACTTCGACAAGGACTGTAAACCAGAACCTTCATTGGTGGACGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCATTGCTGAGAGCAGCAGGTATCCTTTAGGTTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCGAATGTTAAAAAGCTACTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGCGAGATGAAGCTACATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCAGGTTCATGTATTAACGTGGATTCATTTGAGGTTTGGAAAGCAAATTTCCACCAGAACAGTGCAATTATTGAAGTGGAAAATGATGATGTGAAGGTTCCTAAATTGTCACATCCCATTGACAGGCCAATCCCTAATTTATCCAACCCAGTCATACAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTCGTCAAAGGACAGAGAATACTTGTAGGCTACAAGCAAGGAAATGGCATACTCTGTAGTCACTGTAATCGAGAGATCAGCCCTTCACAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAGCCCTACCGCCACATTTATACTACAAATGGACTTACGCTTCATGATATAGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGATAGTGATGATATGTGCGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTTGAAGGCTCCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAATATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGATCGAACTGTACTTCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGGTTATGTGATCTGAAGGAACTTCCCAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCTTTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATTCCTTATCAGATTTAATAATTAGGAAGCATGTTGGAAAAGGATTACCAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTCCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATTCCTGTTATGGTTTATGGGAGAAATATATCTGGGCAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCGATAGTTGTATCGGCTGGTCTTCTTAGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATCGTTGCGACAAGTAGAGAACATCAGGGCAGGGGTTATTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTGAACGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACAAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTCCAGCAGTCGACGTTGACATGA 2532 42.81 MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFHDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTPRNDVDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDKNDASMSADKVRSYGNFDKDCKPEPSLVDDACTETSAHSWEGIAESSRYPLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLHGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSCINVDSFEVWKANFHQNSAIIEVENDDVKVPKLSHPIDRPIPNLSNPVIQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILVGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNLKAPSGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVAFQNTVLNGAQIIPDSLSDLIIRKHVGKGLPVDGALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGRGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQSTLT 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 674389 682999 + CmoCh14G001540.1 Cmo14g00154 395420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00154 843 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Cmo14g00154 843 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 721 816 IPR016181 -
Cmo14g00154 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 547 IPR013083 -
Cmo14g00154 843 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Cmo14g00154 843 Pfam Tify domain binding domain 425 474 IPR032308 -
Cmo14g00154 843 Pfam Tify domain binding domain 258 312 IPR032308 -
Cmo14g00154 843 SMART PHD_3 570 627 IPR001965 -
Cmo14g00154 843 SMART PHD_3 491 532 IPR001965 -
Cmo14g00154 843 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Cmo14g00154 843 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 35 354 - -
Cmo14g00154 843 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 368 839 - -
Cmo14g00154 843 MobiDBLite consensus disorder prediction 1 115 - -
Cmo14g00154 843 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Cmo14g00154 843 MobiDBLite consensus disorder prediction 79 115 - -
Cmo14g00154 843 Pfam PHD-finger 491 533 IPR019787 -
Cmo14g00154 843 Gene3D - 678 837 - -
Cmo14g00154 843 MobiDBLite consensus disorder prediction 21 56 - -
Cmo14g00154 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Cmo14g00154 843 PANTHER AUTOIMMUNE REGULATOR 368 839 - -
Cmo14g00154 843 PANTHER AUTOIMMUNE REGULATOR 35 354 - -
Cmo14g00154 843 SUPERFAMILY FYVE/PHD zinc finger 487 535 IPR011011 -
Cmo14g00154 843 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00154 - - - cmax:111481523 1657.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00314 Cmo14g00154 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00831 Cmo-Chr2:5051530 Cmo14g00154 Cmo-Chr14:674389 5.21E-34 dispersed
Cmo02g01406 Cmo-Chr2:8343868 Cmo14g00154 Cmo-Chr14:674389 0 dispersed
Cmo06g00409 Cmo-Chr6:1968813 Cmo14g00154 Cmo-Chr14:674389 3.39E-15 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo20g00564 Cmo-Chr20:2712965 0 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo20g00463 Cmo-Chr20:2147031 2.10E-43 wgd
Cmo14g00154 Cmo-Chr14:674389 Cmo04g00229 Cmo-Chr4:1146103 5.05E-44 wgd
Cmo14g00154 Cmo-Chr14:674389 Cmo04g01272 Cmo-Chr4:6453158 8.35E-42 wgd
Cmo14g00154 Cmo-Chr14:674389 Cmo06g00314 Cmo-Chr6:1533434 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00154 CST 25 837 PHD Transcription Factor Family AT3G53680 53.9 5.9e-250 861.3
Cmo06g00314 CST 18 837 PHD Transcription Factor Family AT3G53680 53.5 1.0e-249 860.5
Cmo20g00463 CST 312 450 PHD Transcription Factor Family AT3G53680 51.8 6.1e-37 153.7
Cmo04g00229 CST,ECH 438 564 PHD Transcription Factor Family AT3G53680 55.1 6.1e-37 153.7
Cmo04g01272 CST,ECH 437 563 PHD Transcription Factor Family AT3G53680 54.3 2.3e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10904 PF16135 TDBD 2.90E-12 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g00154 Cmo_Chr14 FPKM 0.0 0.0 0.0 0.248747 4.958196 6.219306 4.224691 0.0 0.0 0.0