Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00154 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTCCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCTTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCAGAAGTTTCAAATCCTGTAATTTCTCCGAAAGGGAATCATTTCCATGATATTACCAGCCAACCTGAGGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACCTCGGCTTGTTCGGGTAATTCAAGCTCGGAGGACATCTCTAGCAATGGAGTTCGTTGCCAGAATGACACGCCTCGAAATGACGTTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATACCCAAGCATGCTAGTTCAACTGGAATTAGAAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAAAAATGACGCATCCATGTCAGCAGACAAAGTTCGTTCATATGGGAACTTCGACAAGGACTGTAAACCAGAACCTTCATTGGTGGACGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCATTGCTGAGAGCAGCAGGTATCCTTTAGGTTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCGAATGTTAAAAAGCTACTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGCGAGATGAAGCTACATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCAGGTTCATGTATTAACGTGGATTCATTTGAGGTTTGGAAAGCAAATTTCCACCAGAACAGTGCAATTATTGAAGTGGAAAATGATGATGTGAAGGTTCCTAAATTGTCACATCCCATTGACAGGCCAATCCCTAATTTATCCAACCCAGTCATACAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTCGTCAAAGGACAGAGAATACTTGTAGGCTACAAGCAAGGAAATGGCATACTCTGTAGTCACTGTAATCGAGAGATCAGCCCTTCACAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAGCCCTACCGCCACATTTATACTACAAATGGACTTACGCTTCATGATATAGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGATAGTGATGATATGTGCGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTTGAAGGCTCCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAATATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAATTTGATGATCGAACTGTACTTCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGGTTATGTGATCTGAAGGAACTTCCCAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCTTTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATTCCTTATCAGATTTAATAATTAGGAAGCATGTTGGAAAAGGATTACCAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTCCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATTCCTGTTATGGTTTATGGGAGAAATATATCTGGGCAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCGATAGTTGTATCGGCTGGTCTTCTTAGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATCGTTGCGACAAGTAGAGAACATCAGGGCAGGGGTTATTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTGAACGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACAAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTCCAGCAGTCGACGTTGACATGA 2532 42.81 MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFHDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTPRNDVDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDKNDASMSADKVRSYGNFDKDCKPEPSLVDDACTETSAHSWEGIAESSRYPLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLHGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSCINVDSFEVWKANFHQNSAIIEVENDDVKVPKLSHPIDRPIPNLSNPVIQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILVGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNLKAPSGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVAFQNTVLNGAQIIPDSLSDLIIRKHVGKGLPVDGALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGRGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQSTLT 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 674389 682999 + CmoCh14G001540.1 Cmo14g00154 395420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00154 843 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Cmo14g00154 843 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 721 816 IPR016181 -
Cmo14g00154 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 547 IPR013083 -
Cmo14g00154 843 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Cmo14g00154 843 Pfam Tify domain binding domain 425 474 IPR032308 -
Cmo14g00154 843 Pfam Tify domain binding domain 258 312 IPR032308 -
Cmo14g00154 843 SMART PHD_3 570 627 IPR001965 -
Cmo14g00154 843 SMART PHD_3 491 532 IPR001965 -
Cmo14g00154 843 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Cmo14g00154 843 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 35 354 - -
Cmo14g00154 843 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 368 839 - -
Cmo14g00154 843 MobiDBLite consensus disorder prediction 1 115 - -
Cmo14g00154 843 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Cmo14g00154 843 MobiDBLite consensus disorder prediction 79 115 - -
Cmo14g00154 843 Pfam PHD-finger 491 533 IPR019787 -
Cmo14g00154 843 Gene3D - 678 837 - -
Cmo14g00154 843 MobiDBLite consensus disorder prediction 21 56 - -
Cmo14g00154 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Cmo14g00154 843 PANTHER AUTOIMMUNE REGULATOR 368 839 - -
Cmo14g00154 843 PANTHER AUTOIMMUNE REGULATOR 35 354 - -
Cmo14g00154 843 SUPERFAMILY FYVE/PHD zinc finger 487 535 IPR011011 -
Cmo14g00154 843 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00314 Cmo14g00154 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00831 Cmo-Chr2:5051530 Cmo14g00154 Cmo-Chr14:674389 5.21E-34 dispersed
Cmo02g01406 Cmo-Chr2:8343868 Cmo14g00154 Cmo-Chr14:674389 0 dispersed
Cmo06g00409 Cmo-Chr6:1968813 Cmo14g00154 Cmo-Chr14:674389 3.39E-15 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo20g00564 Cmo-Chr20:2712965 0 dispersed
Cmo14g00154 Cmo-Chr14:674389 Cmo20g00463 Cmo-Chr20:2147031 2.10E-43 wgd
Cmo14g00154 Cmo-Chr14:674389 Cmo04g00229 Cmo-Chr4:1146103 5.05E-44 wgd
Cmo14g00154 Cmo-Chr14:674389 Cmo04g01272 Cmo-Chr4:6453158 8.35E-42 wgd
Cmo14g00154 Cmo-Chr14:674389 Cmo06g00314 Cmo-Chr6:1533434 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10904 PF16135 TDBD 2.90E-12 No_clan Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00154 - - cmax:111481523 1657.5