Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00169 | ATGGACAATAAAGCGGCGGAGAGAGTTGTTGTTGCCAGACCGGTTGCATCGAGGCCAACATGTTCCAGTTTTAAGTCATTCTCTGATATCCTTGCGTGTGCCTTCAATACTTCTCCACCTAATATGTCATCAGAAACAACCAAGGTTGCTGCCATAAGACCAAAGACAGTGAGGTTTAAGCTGAAGGACAATCCTGCTCCATCATCCATGGCCAAAATTCCGGAAACCGCCCCTCGAACGATCTCTCGTAGTTCATCTGATAATCTTGCCATATCAGACAGCCAAACCACTGTTTTATTCAAACCTTTGGCGAAGCATGTATCGAAACGGACCGTCTCTCAGCTGTCACACGTTGGGAACACCAATTTGCAAAACTGTTTACCACATCCATTTGATAAGGATAGTATTCAATGTCCAAATCAAGGTAAAGACAATGTCCAATCTGCACTGACCTCAAATCTTCCCCAGAACATCACATCCACCGTTGAAAACAGCCAATCTATTGAAAGCTCAAGAGTGACATTGAATTATAGCAAAGAGGATCCAACATTGCTTCATTCTCAAGTAAGTTGTGCTCAGCCTTCTTATGACGGATATAATTGGAGGAAATATGGACAAAAGCAAGTTAAGGGAAGCAAGTATCCGCGGAGTTATTACAAGTGCACACATCCATGTTGTCCTGTCAAGAAAAAGGTTGAGAGATCATTGGATGGGAAGATTGCTGAAATTGTTTACAAAGGTGAGCACGACCACCCAAAGCCTCAGCCTCTAAAGCTCAACTCATCAGGGACACAAGGGGAAGGTTCGATATCAAATGGAACGGTACGAGATACTAATCCGGAGCTATGGCTTTATTACCTCAATGGACAAATAGAAGGTAGTGAAAGCCGGCTCGAGAATCACATTGAAAAAATTTGTCAAGGAAGAGTTACATTACCCTTTGATCCAGTTGTAGTTAGAGAAGTCCATGGTGGATGTAGAATCTCTGATAATTCATGCGGTCTAAGTGTAGAATGTGAAGAAGGAAGCAAGGGACTTGAATCCACAGGTGATAAATTGCGAAGTAAAAGAAGGGGTGGCAAAAATCCAACAAATGAAGCTGATTTATCAATTGAAGGCGTTTATGAGCACCATGCTATGGCTCGAGGCTCCGCTGATATCGAGATTTCTGGCAAAGGAATTCGCTGGAGAAAATATGGGCAGAAAGTTGTAAAGGGAAATCTATACCCTCGAAGTTACTATAGATGTACCGGTCTCAAATGCAAAGCGCGCAAGTACGTGGAACGAGCGTCTGAGGATCCAGATTCCTTTATCACTACTTATGAAGGAAAACACAATCATGATATCTCACTTGGAAATGCAAATCATAGTGAAGGCAGCCAACATGTGGAGAGGAAATATCGAATCATTTTGAAGATATCGTCGTGCCTATTGCTCATCCATATCGGCCATCTGTTTTCCTCTTCTTGGTTGGATGCTGCTGTGGAAGTTCATCAAAGAGTGCGCAAGGAGATTGAATTAAGCATGATTTGGATTCCTTGTTCTGGAAATTCAAATAGGAAAGTCAGGTCCAAGAAATTAAAGAAGTTGGAATCTCAGAAGAGTCGAGTTGATCCAATCAAAGCTGCTTCAGGGAAACTAAAGACAAGTTCCTCCTTCAGTGAAGCCTCGAAAGGTGGAGGATCTGATCCTATCAAGGCACAGATATTTTCATTCCGGGAGTTGGCAGCTGCTACCAGGAATTTTAGGGCAGACTGTCTTTTGGGCGAGGGAGGTTTTGGTAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTTGTGGCAATCAAACAACTTGACCGCAATGGGTTGCAAGGGAACAGAGAATTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTTAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTTATATATGAATATATGCGTCTAGGAGCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAGTACTAGATTGGAATACAAGAATGAAAATAGCTACTGGGGCAGCACGAGGGTTGGAATATTTGCACGACAAAGCGAGCCCGCCAGTTATTTATCGAGATTTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCCAAGCTGTCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGATAATACACATGTATCTACCAGAGTTATGGGCACTTACGGATATTGTGCTCCTGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCTGATGTTTATAGCTTTGGTGTTGTCCTTCTAGAAATCATAACAGGCAGGAAAGCAATTGATGATTCAAGAGCAGCAGGGGAGCAAAATCTGGTTTCATGGGCAAGACCATTATTTAAAGACCGTATGAGATTTGCGCAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAGTTGCAGCAATGTGTGTTCAAGAGCAGCCAAATATGCGACCTGTGATCGCCGATGTTGTCACAGCTTTATCTTATCTAGCTTCCCAAAGATACGACCCGGGTTCGAACATACCCCACAGCTCTCCTGGATCTGCCAGTACTCCTCCAAGAACCAACAGAGATTCTGATAGGAAGCTTAATGGCGGTCCCGATCTTCCTTCTTCAATGGCGACTGATTTCACAGAAGAACTGAGCGAAAACAATCTTCCAGGACCGAAATCGGCCTTGCCGTTGAATTTAGGATCTGCAGCCGCTGGTAATGGCCAAGTAGATCAACACCAAAATCGCCGTTCATTTGCTGTCGGGCCTTCCCATTCCGTGACTCCCACCGCTACAAAGGAAGGCACTGAATCTCAACGTGCCGTTTTGGGGAGAACATCGGAGCATCATGCTTCTGTTTTTGATATCTTCAAGAAGATCCGTCGTGCGGAGCGGTTCGGGATTCCTGTACGTTTGTCGGAGGCAGAAAAGCGATTCTCTCGAGCTGAGAGGTTCGGCATTGATTCAGTATGTGGACCGGATGAAATGTTCAAAGCAGAAGAGCTGAAGAGAAAGGCCAGAGCGGAGAGGTTCAATGTAAGTTTCATGGGTGTTCCTGATTTGCTTTCTCCACATTTTGCACACTGA | 3165 | 43.73 | MDNKAAERVVVARPVASRPTCSSFKSFSDILACAFNTSPPNMSSETTKVAAIRPKTVRFKLKDNPAPSSMAKIPETAPRTISRSSSDNLAISDSQTTVLFKPLAKHVSKRTVSQLSHVGNTNLQNCLPHPFDKDSIQCPNQGKDNVQSALTSNLPQNITSTVENSQSIESSRVTLNYSKEDPTLLHSQVSCAQPSYDGYNWRKYGQKQVKGSKYPRSYYKCTHPCCPVKKKVERSLDGKIAEIVYKGEHDHPKPQPLKLNSSGTQGEGSISNGTVRDTNPELWLYYLNGQIEGSESRLENHIEKICQGRVTLPFDPVVVREVHGGCRISDNSCGLSVECEEGSKGLESTGDKLRSKRRGGKNPTNEADLSIEGVYEHHAMARGSADIEISGKGIRWRKYGQKVVKGNLYPRSYYRCTGLKCKARKYVERASEDPDSFITTYEGKHNHDISLGNANHSEGSQHVERKYRIILKISSCLLLIHIGHLFSSSWLDAAVEVHQRVRKEIELSMIWIPCSGNSNRKVRSKKLKKLESQKSRVDPIKAASGKLKTSSSFSEASKGGGSDPIKAQIFSFRELAAATRNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMRLGALDDHLHDISPGTKVLDWNTRMKIATGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRMRFAQMADPMLRGQYPSRGLYQALAVAAMCVQEQPNMRPVIADVVTALSYLASQRYDPGSNIPHSSPGSASTPPRTNRDSDRKLNGGPDLPSSMATDFTEELSENNLPGPKSALPLNLGSAAAGNGQVDQHQNRRSFAVGPSHSVTPTATKEGTESQRAVLGRTSEHHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMFKAEELKRKARAERFNVSFMGVPDLLSPHFAH | 1054 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 757185 | 772503 | - | CmoCh14G001690.1 | Cmo14g00169 | 395435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00169 | 1054 | Gene3D | WRKY domain | 377 | 450 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | Gene3D | WRKY domain | 183 | 255 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 866 | 939 | - | - | |
| Cmo14g00169 | 1054 | Gene3D | Transferase(Phosphotransferase) domain 1 | 659 | 869 | - | - | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 866 | 883 | - | - | |
| Cmo14g00169 | 1054 | SUPERFAMILY | Protein kinase-like (PK-like) | 565 | 856 | IPR011009 | - | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 344 | 363 | - | - | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 248 | 273 | - | - | |
| Cmo14g00169 | 1054 | PANTHER | OS07G0668900 PROTEIN | 509 | 894 | - | - | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 523 | 543 | - | - | |
| Cmo14g00169 | 1054 | SMART | WRKY_cls | 390 | 449 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | SMART | WRKY_cls | 195 | 253 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | ProSiteProfiles | WRKY domain profile. | 385 | 450 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 257 | 273 | - | - | |
| Cmo14g00169 | 1054 | Pfam | Protein tyrosine and serine/threonine kinase | 587 | 855 | IPR001245 | GO:0004672|GO:0006468 | |
| Cmo14g00169 | 1054 | Pfam | Tho1/MOS11 C-terminal domain | 981 | 1012 | IPR040746 | - | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 945 | 964 | - | - | |
| Cmo14g00169 | 1054 | MobiDBLite | consensus disorder prediction | 342 | 367 | - | - | |
| Cmo14g00169 | 1054 | Pfam | WRKY DNA -binding domain | 197 | 252 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | Pfam | WRKY DNA -binding domain | 393 | 447 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | ProSiteProfiles | Protein kinase domain profile. | 582 | 859 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo14g00169 | 1054 | SUPERFAMILY | WRKY DNA-binding domain | 193 | 254 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | ProSitePatterns | Protein kinases ATP-binding region signature. | 588 | 611 | IPR017441 | GO:0005524 | |
| Cmo14g00169 | 1054 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 705 | 717 | IPR008271 | GO:0004672|GO:0006468 | |
| Cmo14g00169 | 1054 | SUPERFAMILY | WRKY DNA-binding domain | 387 | 449 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | Gene3D | Phosphorylase Kinase; domain 1 | 557 | 658 | - | - | |
| Cmo14g00169 | 1054 | SMART | serkin_6 | 582 | 859 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo14g00169 | 1054 | ProSiteProfiles | WRKY domain profile. | 197 | 254 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
| Cmo14g00169 | 1054 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED | 509 | 894 | - | - | |
| Cmo14g00169 | 1054 | CDD | STKc_IRAK | 588 | 856 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g00265 | Cmo-Chr4:1331189 | Cmo14g00169 | Cmo-Chr14:757185 | 0 | dispersed | |
| Cmo04g01306 | Cmo-Chr4:6640283 | Cmo14g00169 | Cmo-Chr14:757185 | 0 | dispersed | |
| Cmo06g00339 | Cmo-Chr6:1641123 | Cmo14g00169 | Cmo-Chr14:757185 | 0 | dispersed | |
| Cmo13g00174 | Cmo-Chr13:1158527 | Cmo14g00169 | Cmo-Chr14:757185 | 2.23E-177 | dispersed | |
| Cmo14g00169 | Cmo-Chr14:757185 | Cmo14g01676 | Cmo-Chr14:13208212 | 0 | dispersed | |
| Cmo06g00336 | Cmo-Chr6:1629719 | Cmo14g00169 | Cmo-Chr14:757185 | 2.66E-16 | transposed | |
| Cmo14g00169 | Cmo-Chr14:757185 | Cmo20g00489 | Cmo-Chr20:2288463 | 2.67E-159 | wgd | |
| Cmo14g00169 | Cmo-Chr14:757185 | Cmo03g00475 | Cmo-Chr3:5170458 | 3.22E-16 | wgd | |
| Cmo14g00169 | Cmo-Chr14:757185 | Cmo07g00994 | Cmo-Chr7:4886750 | 8.59E-16 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10906 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-44 | CL0016 | Cmo | TF | |
| 74822 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-44 | CL0016 | Cmo | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00169 | - | - | bhj:120090000 | 758.059 |