Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00175 | ATGCTGGATCTTAACCTCCAAGTTGTTTCCTCTGATTCGGTTGAGTTGGTTACTGAGAGGCTTTTCCAGTTTCCACCGATCAGAATGGAAAGCGCCGGTAGCTTTAACGGCGATCTTTCTGCCAGCACTACCGGCGACGAGGACTCATCTTCCAACGCTGATGAAGCTTTCCCGTTCGCCTTCGGTAAGGACTGCGCGGTTCAGGAAAACTTAACGGCCAAGTCACTCTGTATTTCCGATAACCAGCGCGATCAGACGATGGAGCTTTTTCCATTAACAGGCGGGTTATCTTCTGGTTCGAGTTCTCAGAAGCAGTGGCTGGAGGTTTCTCCACCGGAATTTCACTATTGGGGAGGAGCGCTGGAGCGGCGAATAACAGCACCGCCAGGGCAACAACAGCATCAGCCGATGAGGAAGAATCGGCGAGGTCCAAGGTCTCGGAGTTCGCAGTATCGTGGCGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAAGTTTATCTGGGTGGTTTCGATACTGCACATGCGGCTGCTAGGGCGTATGATCGGGCGGCGATCAAGTTTCGGGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTATGATGAAGATATTAAGCAGGTGGGATTGGCTAAGTTAATACTCATTACTGTCAGAACTTCAAACTCTTTCTCTAACGCCATTGATGAAGAGCTTTACTCTTGGCTGCCATTAATGTCCCAGATGAGTAATTTTACCAAGGAAGAGTTTGTTCATATTCTTCGCCGCCATAGCACTGGATTTTCGAGGGGGAGCTCCAAGTACAGAGGGGTCACTCTGCATAAATGTGGGCGATGGGAGGCTCGGATGGGCCAGTTCTTGGGCAAGAAGTACATATATCTTGGTCTCTTTGATAGTGAGATTGAGGCTGCAAGAGCATATGACAAAGCTGCATTGAAATGCAATGGTAAGGAGGCTGTCACAAACTTTGAACCAAGTTCTTATGTTGCAGAGATGGCTTCTGAGGCGGCTGGCACAGCAGGTTTGCTCCTTCTCTGGCTATACAATTTGCTACTTCATCATTTAACGACCCACAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTGTGAGGCTCAAAGTGAGAGCATTGCCATGTTTGAGAGAAGAGCTATGCCTGAGAACTCTGTTTCAGCAGCAATTAGATCATCCCATTCCGAGCCGTATAGCTTTGCAGTGCCTTCCAATTACCATTCTCCTTGGAGTGTTTCAAACTCCAGTTTCTTTCCCAACTCAAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGGTTGGGGTTGGGTCATGGGAGTGGCAAATCCATGGCCACCCAAGTGGAACAACCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCGACTGCCATTCCATCAGCTTCATCTGGTGTTGGTGAAACCCATTTCCCAGCAATCTTCTACTGTAGGAGTTGA | 1548 | 48.19 | MLDLNLQVVSSDSVELVTERLFQFPPIRMESAGSFNGDLSASTTGDEDSSSNADEAFPFAFGKDCAVQENLTAKSLCISDNQRDQTMELFPLTGGLSSGSSSQKQWLEVSPPEFHYWGGALERRITAPPGQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQVGLAKLILITVRTSNSFSNAIDEELYSWLPLMSQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALKCNGKEAVTNFEPSSYVAEMASEAAGTAGLLLLWLYNLLLHHLTTHNNQILDLNLGIAPPNLCEAQSESIAMFERRAMPENSVSAAIRSSHSEPYSFAVPSNYHSPWSVSNSSFFPNSRERATEMRMGVGVGVGSWEWQIHGHPSGTTSVPLFSAAASSGFPSSSSSSSSSTAIPSASSGVGETHFPAIFYCRS | 515 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 787506 | 790215 | + | CmoCh14G001750.1 | Cmo14g00175 | 395441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00175 | 515 | ProSiteProfiles | AP2/ERF domain profile. | 150 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | PRINTS | Ethylene responsive element binding protein signature | 315 | 335 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | PRINTS | Ethylene responsive element binding protein signature | 277 | 288 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | SMART | rav1_2 | 276 | 339 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | SMART | rav1_2 | 150 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | MobiDBLite | consensus disorder prediction | 127 | 150 | - | - | |
Cmo14g00175 | 515 | SUPERFAMILY | DNA-binding domain | 149 | 208 | IPR016177 | GO:0003677 | |
Cmo14g00175 | 515 | Pfam | AP2 domain | 275 | 324 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | Pfam | AP2 domain | 150 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | MobiDBLite | consensus disorder prediction | 482 | 501 | - | - | |
Cmo14g00175 | 515 | CDD | AP2 | 275 | 335 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | MobiDBLite | consensus disorder prediction | 35 | 51 | - | - | |
Cmo14g00175 | 515 | ProSiteProfiles | AP2/ERF domain profile. | 276 | 333 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | SUPERFAMILY | DNA-binding domain | 275 | 334 | IPR016177 | GO:0003677 | |
Cmo14g00175 | 515 | MobiDBLite | consensus disorder prediction | 33 | 53 | - | - | |
Cmo14g00175 | 515 | Gene3D | AP2/ERF domain | 149 | 208 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | Gene3D | AP2/ERF domain | 275 | 334 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 218 | - | - | |
Cmo14g00175 | 515 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 249 | 495 | - | - | |
Cmo14g00175 | 515 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 218 | - | - | |
Cmo14g00175 | 515 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 249 | 495 | - | - | |
Cmo14g00175 | 515 | CDD | AP2 | 149 | 208 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00175 | 515 | MobiDBLite | consensus disorder prediction | 482 | 500 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00175 | Cmo-Chr14:787506 | Cmo07g00637 | Cmo-Chr7:2876799 | 8.19E-09 | dispersed | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo02g00859 | Cmo-Chr2:5223165 | 2.81E-95 | wgd | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo20g00493 | Cmo-Chr20:2325892 | 1.91E-118 | wgd | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo04g00269 | Cmo-Chr4:1358706 | 8.17E-45 | wgd | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo04g01310 | Cmo-Chr4:6668332 | 1.11E-35 | wgd | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo06g00342 | Cmo-Chr6:1658640 | 5.93E-146 | wgd | |
Cmo14g00175 | Cmo-Chr14:787506 | Cmo07g00986 | Cmo-Chr7:4842641 | 1.08E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10908 | PF00847 | AP2 | 9.60E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00175 | K09284 | - | csv:101211242 | 694.501 |