Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00175 ATGCTGGATCTTAACCTCCAAGTTGTTTCCTCTGATTCGGTTGAGTTGGTTACTGAGAGGCTTTTCCAGTTTCCACCGATCAGAATGGAAAGCGCCGGTAGCTTTAACGGCGATCTTTCTGCCAGCACTACCGGCGACGAGGACTCATCTTCCAACGCTGATGAAGCTTTCCCGTTCGCCTTCGGTAAGGACTGCGCGGTTCAGGAAAACTTAACGGCCAAGTCACTCTGTATTTCCGATAACCAGCGCGATCAGACGATGGAGCTTTTTCCATTAACAGGCGGGTTATCTTCTGGTTCGAGTTCTCAGAAGCAGTGGCTGGAGGTTTCTCCACCGGAATTTCACTATTGGGGAGGAGCGCTGGAGCGGCGAATAACAGCACCGCCAGGGCAACAACAGCATCAGCCGATGAGGAAGAATCGGCGAGGTCCAAGGTCTCGGAGTTCGCAGTATCGTGGCGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAAGTTTATCTGGGTGGTTTCGATACTGCACATGCGGCTGCTAGGGCGTATGATCGGGCGGCGATCAAGTTTCGGGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTATGATGAAGATATTAAGCAGGTGGGATTGGCTAAGTTAATACTCATTACTGTCAGAACTTCAAACTCTTTCTCTAACGCCATTGATGAAGAGCTTTACTCTTGGCTGCCATTAATGTCCCAGATGAGTAATTTTACCAAGGAAGAGTTTGTTCATATTCTTCGCCGCCATAGCACTGGATTTTCGAGGGGGAGCTCCAAGTACAGAGGGGTCACTCTGCATAAATGTGGGCGATGGGAGGCTCGGATGGGCCAGTTCTTGGGCAAGAAGTACATATATCTTGGTCTCTTTGATAGTGAGATTGAGGCTGCAAGAGCATATGACAAAGCTGCATTGAAATGCAATGGTAAGGAGGCTGTCACAAACTTTGAACCAAGTTCTTATGTTGCAGAGATGGCTTCTGAGGCGGCTGGCACAGCAGGTTTGCTCCTTCTCTGGCTATACAATTTGCTACTTCATCATTTAACGACCCACAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTGTGAGGCTCAAAGTGAGAGCATTGCCATGTTTGAGAGAAGAGCTATGCCTGAGAACTCTGTTTCAGCAGCAATTAGATCATCCCATTCCGAGCCGTATAGCTTTGCAGTGCCTTCCAATTACCATTCTCCTTGGAGTGTTTCAAACTCCAGTTTCTTTCCCAACTCAAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGGTTGGGGTTGGGTCATGGGAGTGGCAAATCCATGGCCACCCAAGTGGAACAACCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCGACTGCCATTCCATCAGCTTCATCTGGTGTTGGTGAAACCCATTTCCCAGCAATCTTCTACTGTAGGAGTTGA 1548 48.19 MLDLNLQVVSSDSVELVTERLFQFPPIRMESAGSFNGDLSASTTGDEDSSSNADEAFPFAFGKDCAVQENLTAKSLCISDNQRDQTMELFPLTGGLSSGSSSQKQWLEVSPPEFHYWGGALERRITAPPGQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQVGLAKLILITVRTSNSFSNAIDEELYSWLPLMSQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALKCNGKEAVTNFEPSSYVAEMASEAAGTAGLLLLWLYNLLLHHLTTHNNQILDLNLGIAPPNLCEAQSESIAMFERRAMPENSVSAAIRSSHSEPYSFAVPSNYHSPWSVSNSSFFPNSRERATEMRMGVGVGVGSWEWQIHGHPSGTTSVPLFSAAASSGFPSSSSSSSSSTAIPSASSGVGETHFPAIFYCRS 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 787506 790215 + CmoCh14G001750.1 Cmo14g00175 395441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00175 515 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 PRINTS Ethylene responsive element binding protein signature 315 335 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 SMART rav1_2 276 339 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 MobiDBLite consensus disorder prediction 127 150 - -
Cmo14g00175 515 SUPERFAMILY DNA-binding domain 149 208 IPR016177 GO:0003677
Cmo14g00175 515 Pfam AP2 domain 275 324 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 MobiDBLite consensus disorder prediction 482 501 - -
Cmo14g00175 515 CDD AP2 275 335 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 MobiDBLite consensus disorder prediction 35 51 - -
Cmo14g00175 515 ProSiteProfiles AP2/ERF domain profile. 276 333 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 SUPERFAMILY DNA-binding domain 275 334 IPR016177 GO:0003677
Cmo14g00175 515 MobiDBLite consensus disorder prediction 33 53 - -
Cmo14g00175 515 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Cmo14g00175 515 Gene3D AP2/ERF domain 275 334 IPR036955 GO:0003700|GO:0006355
Cmo14g00175 515 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 218 - -
Cmo14g00175 515 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 249 495 - -
Cmo14g00175 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 218 - -
Cmo14g00175 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 249 495 - -
Cmo14g00175 515 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
Cmo14g00175 515 MobiDBLite consensus disorder prediction 482 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00175 Cmo-Chr14:787506 Cmo07g00637 Cmo-Chr7:2876799 8.19E-09 dispersed
Cmo14g00175 Cmo-Chr14:787506 Cmo02g00859 Cmo-Chr2:5223165 2.81E-95 wgd
Cmo14g00175 Cmo-Chr14:787506 Cmo20g00493 Cmo-Chr20:2325892 1.91E-118 wgd
Cmo14g00175 Cmo-Chr14:787506 Cmo04g00269 Cmo-Chr4:1358706 8.17E-45 wgd
Cmo14g00175 Cmo-Chr14:787506 Cmo04g01310 Cmo-Chr4:6668332 1.11E-35 wgd
Cmo14g00175 Cmo-Chr14:787506 Cmo06g00342 Cmo-Chr6:1658640 5.93E-146 wgd
Cmo14g00175 Cmo-Chr14:787506 Cmo07g00986 Cmo-Chr7:4842641 1.08E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10908 PF00847 AP2 9.60E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00175 K09284 - csv:101211242 694.501