Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00178 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAAGCTCTCCCTGCTAATGGGAAGATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTATCGGAGTTCATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGCCAAAGAGAGAAGCGAAAGACGATTAATGGCGATGATTTACTTTGGGCGATGGCCACTCTCGGATTTGAGGATTATATTGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGATCGCTCATGGAGGCTCGTTTTCCCAAGGAGTTAATTATGCGACTTCTCAATCACAAGCCCAGCATATGATGGTTCCTATGCAAGGTACCGACTAA 516 47.29 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQSQAQHMMVPMQGTD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 811623 815054 + CmoCh14G001780.1 Cmo14g00178 395444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00178 171 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Cmo14g00178 171 SUPERFAMILY Histone-fold 27 127 IPR009072 GO:0046982
Cmo14g00178 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo14g00178 171 Gene3D Histone, subunit A 17 162 IPR009072 GO:0046982
Cmo14g00178 171 MobiDBLite consensus disorder prediction 141 171 - -
Cmo14g00178 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo14g00178 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cmo14g00178 171 MobiDBLite consensus disorder prediction 117 171 - -
Cmo14g00178 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cmo14g00178 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cmo14g00178 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cmo14g00178 171 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00682 Cmo-Chr6:3468038 Cmo14g00178 Cmo-Chr14:811623 9.92E-44 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo20g00682 Cmo-Chr20:3345325 6.34E-54 dispersed
Cmo16g01003 Cmo-Chr16:6904163 Cmo14g00178 Cmo-Chr14:811623 9.83E-46 dispersed
Cmo17g01087 Cmo-Chr17:8978176 Cmo14g00178 Cmo-Chr14:811623 3.97E-48 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo04g00271 Cmo-Chr4:1368977 4.39E-80 wgd
Cmo14g00178 Cmo-Chr14:811623 Cmo04g01312 Cmo-Chr4:6677894 1.59E-75 wgd
Cmo14g00178 Cmo-Chr14:811623 Cmo06g00346 Cmo-Chr6:1673581 1.44E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10909 PF00808 CBFD_NFYB_HMF 7.60E-28 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00178 K08065 - csv:101212699 335.109