Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00195 ATGAGTGTGATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTACGACAAATATGATGTAGAGAAGCAGAGAGATCTCAATGTCTCTGGTGACGATGCTTTCGCTCGACTCTATGACACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCCAGAGAGAAGAATAGGGCATCGGTTGTGGCGTTGAATGCGGAGATTCGTCATACCAAGGCTCGATTACTAGAGGAGATCCCCAAGTTGCAGAGATTAGCTGTAAAGAGGGTTAAAGGACTATCAACTGAAGATCTTACCACTAGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGAACTACTTCTTCCTCAAAGAAGAATGGGGGTTGGAACTCCTCAACTTCACGTGCTGAAATCAAATTTGACTCGGATGGGCGATTTGATAATGAGTACTTCCAACACACTGAGGAGTCGAGTCAATTCAGACAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTAGACATGATATCAGAGGGGTTGGATACTCTGAAGAACATGGCGCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTAAGGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGCATTGATATCATTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATTTATACAAGTAA 786 44.02 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYDTVEADIEAALQKAEDASREKNRASVVALNAEIRHTKARLLEEIPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTTSSSKKNGGWNSSTSRAEIKFDSDGRFDNEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLRDTVNQLRSSRNFCIDIILLCIILGIAAYLYK 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 879672 881721 + CmoCh14G001950.1 Cmo14g00195 395461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00195 261 PANTHER SYNTAXIN-73 1 260 - -
Cmo14g00195 261 SMART tSNARE_6 165 232 IPR000727 -
Cmo14g00195 261 PANTHER SYNTAXIN 1 260 IPR045242 -
Cmo14g00195 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cmo14g00195 261 CDD SNARE_Qc 175 230 - -
Cmo14g00195 261 Coils Coil 40 67 - -
Cmo14g00195 261 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo14g00195 261 Gene3D - 170 231 - -
Cmo14g00195 261 Pfam SNARE domain 207 256 IPR000727 -
Cmo14g00195 261 MobiDBLite consensus disorder prediction 120 139 - -
Cmo14g00195 261 Coils Coil 219 239 - -
Cmo14g00195 261 SUPERFAMILY SNARE fusion complex 163 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00195 Cmo-Chr14:879672 Cmo18g01136 Cmo-Chr18:11656051 5.07E-06 dispersed
Cmo01g01094 Cmo-Chr1:9117464 Cmo14g00195 Cmo-Chr14:879672 2.98E-172 transposed
Cmo14g00195 Cmo-Chr14:879672 Cmo02g00885 Cmo-Chr2:5474935 5.53E-120 wgd
Cmo14g00195 Cmo-Chr14:879672 Cmo20g00513 Cmo-Chr20:2456641 2.60E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00195 K08506 - csv:101215905 469.929