Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00196 ATGTCATCTAATCCCTTTTCTCTTCTCTCTTCCACTCCCACTCCCTTTGCTCACCACCCAGATGCAAACCCTAGCCCTAACCCTAAACCCAAACCGTCCGCTGCGGCGAAGAAGAAACGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTGTTGCTTTGTCGCCGAAATCGCTCATGGCAACGAATAGATTCATATGTGAAATTTGCAATAAGGGGTTTCAAAGAGATCAGAATCTGCAACTTCATCGACGAGGACATAACCTACCGTGGAAGCTTCGACAACGAACGAACAAGGAGCCGATTAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTTCACCACGATCCATCACGAGCCCTCGGCGATCTCACCGGAGTAAAGAAACATTTCAGCCGAAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACAAGAGAATATAAGTGTGACTGTGGAACTCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCATTAGCTGAAGAAAGTGCAAGAATCACGACAGTTTCAGCAACAAATATTCTGAATAATCTCAGAAATGATTCAGTTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCAGACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCACTCTGATCACTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTCTCACTTTGGTTGAACAATAGCAACAATATTTCCAACTTTTATGGAGCTTCCTCTTCTTCTTCCAATCTTTTTGGATCCATAGCCGAAACTGGGCTTTCGATGTTGCCCGTGTTCGAGAAGGAAGATGTCGAGAGGAAGGGAAGTTTGCCGAAAGCTACGTCGTCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCCGTTGTTTCTTCTTCTCCGATGTCAGCCACCGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCACCAACAATAATTCCCCGCTTATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCTTCGTCCTCGTCCTCCAACGCTGTAAGCTTGAACTCTTTGAACAAATCTAGAAGCATGTCAATGGCTGACTCGGTTCAGATGGTCGGTACCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAACAACGGTAACAACAGTATGAAAAGTAACGACCAAACGAGAGACTTCCTCGGTGTCGGAGGAAACGGAGAAGCACCCCGGCCACCGTTCCTTCCACCAGAGCTGGCAAAATTCACCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1446 46.2 MSSNPFSLLSSTPTPFAHHPDANPSPNPKPKPSAAAKKKRNLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGVKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSVLLHQQDQSLIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNSNNISNFYGASSSSSNLFGSIAETGLSMLPVFEKEDVERKGSLPKATSSAAALLSGQSSSVVSSSPMSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMSMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFTAINSTMGLSQFAANH 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 889620 891835 + CmoCh14G001960.1 Cmo14g00196 395462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00196 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Cmo14g00196 481 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Cmo14g00196 481 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Cmo14g00196 481 SMART c2h2final6 66 88 IPR013087 -
Cmo14g00196 481 SMART c2h2final6 108 138 IPR013087 -
Cmo14g00196 481 SMART c2h2final6 143 163 IPR013087 -
Cmo14g00196 481 PANTHER ZINC FINGER PROTEIN JACKDAW 5 469 IPR033243 GO:0003700
Cmo14g00196 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 469 - -
Cmo14g00196 481 Gene3D Classic Zinc Finger 45 117 - -
Cmo14g00196 481 Gene3D Classic Zinc Finger 118 200 - -
Cmo14g00196 481 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Cmo14g00196 481 MobiDBLite consensus disorder prediction 1 18 - -
Cmo14g00196 481 MobiDBLite consensus disorder prediction 1 50 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00978 Cmo14g00196 CCT
Cmo07g00978 Cmo14g00196 ECH
Cmo06g00365 Cmo14g00196 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00064 Cmo-Chr1:257387 Cmo14g00196 Cmo-Chr14:889620 2.42E-116 dispersed
Cmo07g00500 Cmo-Chr7:2256698 Cmo14g00196 Cmo-Chr14:889620 1.50E-102 dispersed
Cmo08g00742 Cmo-Chr8:4706485 Cmo14g00196 Cmo-Chr14:889620 2.89E-112 dispersed
Cmo11g01874 Cmo-Chr11:13053925 Cmo14g00196 Cmo-Chr14:889620 1.52E-111 dispersed
Cmo14g00196 Cmo-Chr14:889620 Cmo14g01296 Cmo-Chr14:10837630 5.41E-114 dispersed
Cmo16g00708 Cmo-Chr16:3529729 Cmo14g00196 Cmo-Chr14:889620 5.02E-109 dispersed
Cmo17g00694 Cmo-Chr17:7056431 Cmo14g00196 Cmo-Chr14:889620 4.13E-114 dispersed
Cmo17g01183 Cmo-Chr17:9502242 Cmo14g00196 Cmo-Chr14:889620 5.55E-105 dispersed
Cmo04g01048 Cmo-Chr4:5233890 Cmo14g00196 Cmo-Chr14:889620 3.19E-104 transposed
Cmo18g00662 Cmo-Chr18:8407004 Cmo14g00196 Cmo-Chr14:889620 1.85E-110 transposed
Cmo14g00196 Cmo-Chr14:889620 Cmo06g00365 Cmo-Chr6:1771849 0 wgd
Cmo14g00196 Cmo-Chr14:889620 Cmo07g00978 Cmo-Chr7:4810001 1.67E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10911 PF12171 zf-C2H2_jaz 7.00E-05 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00196 K25870 - csv:101213422 710.679