Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00196 | ATGTCATCTAATCCCTTTTCTCTTCTCTCTTCCACTCCCACTCCCTTTGCTCACCACCCAGATGCAAACCCTAGCCCTAACCCTAAACCCAAACCGTCCGCTGCGGCGAAGAAGAAACGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTGTTGCTTTGTCGCCGAAATCGCTCATGGCAACGAATAGATTCATATGTGAAATTTGCAATAAGGGGTTTCAAAGAGATCAGAATCTGCAACTTCATCGACGAGGACATAACCTACCGTGGAAGCTTCGACAACGAACGAACAAGGAGCCGATTAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTTCACCACGATCCATCACGAGCCCTCGGCGATCTCACCGGAGTAAAGAAACATTTCAGCCGAAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACAAGAGAATATAAGTGTGACTGTGGAACTCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCATTAGCTGAAGAAAGTGCAAGAATCACGACAGTTTCAGCAACAAATATTCTGAATAATCTCAGAAATGATTCAGTTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCAGACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCACTCTGATCACTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTCTCACTTTGGTTGAACAATAGCAACAATATTTCCAACTTTTATGGAGCTTCCTCTTCTTCTTCCAATCTTTTTGGATCCATAGCCGAAACTGGGCTTTCGATGTTGCCCGTGTTCGAGAAGGAAGATGTCGAGAGGAAGGGAAGTTTGCCGAAAGCTACGTCGTCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCCGTTGTTTCTTCTTCTCCGATGTCAGCCACCGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCACCAACAATAATTCCCCGCTTATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCTTCGTCCTCGTCCTCCAACGCTGTAAGCTTGAACTCTTTGAACAAATCTAGAAGCATGTCAATGGCTGACTCGGTTCAGATGGTCGGTACCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAACAACGGTAACAACAGTATGAAAAGTAACGACCAAACGAGAGACTTCCTCGGTGTCGGAGGAAACGGAGAAGCACCCCGGCCACCGTTCCTTCCACCAGAGCTGGCAAAATTCACCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA | 1446 | 46.2 | MSSNPFSLLSSTPTPFAHHPDANPSPNPKPKPSAAAKKKRNLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGVKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSVLLHQQDQSLIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNSNNISNFYGASSSSSNLFGSIAETGLSMLPVFEKEDVERKGSLPKATSSAAALLSGQSSSVVSSSPMSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMSMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPRPPFLPPELAKFTAINSTMGLSQFAANH | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 889620 | 891835 | + | CmoCh14G001960.1 | Cmo14g00196 | 395462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00196 | 481 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - | |
Cmo14g00196 | 481 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Cmo14g00196 | 481 | Pfam | Zinc-finger double-stranded RNA-binding | 66 | 88 | IPR022755 | - | |
Cmo14g00196 | 481 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
Cmo14g00196 | 481 | SMART | c2h2final6 | 108 | 138 | IPR013087 | - | |
Cmo14g00196 | 481 | SMART | c2h2final6 | 143 | 163 | IPR013087 | - | |
Cmo14g00196 | 481 | PANTHER | ZINC FINGER PROTEIN JACKDAW | 5 | 469 | IPR033243 | GO:0003700 | |
Cmo14g00196 | 481 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 5 | 469 | - | - | |
Cmo14g00196 | 481 | Gene3D | Classic Zinc Finger | 45 | 117 | - | - | |
Cmo14g00196 | 481 | Gene3D | Classic Zinc Finger | 118 | 200 | - | - | |
Cmo14g00196 | 481 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 163 | IPR036236 | - | |
Cmo14g00196 | 481 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo14g00196 | 481 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo07g00978 | Cmo14g00196 | CCT | |
Cmo07g00978 | Cmo14g00196 | ECH | |
Cmo06g00365 | Cmo14g00196 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00064 | Cmo-Chr1:257387 | Cmo14g00196 | Cmo-Chr14:889620 | 2.42E-116 | dispersed | |
Cmo07g00500 | Cmo-Chr7:2256698 | Cmo14g00196 | Cmo-Chr14:889620 | 1.50E-102 | dispersed | |
Cmo08g00742 | Cmo-Chr8:4706485 | Cmo14g00196 | Cmo-Chr14:889620 | 2.89E-112 | dispersed | |
Cmo11g01874 | Cmo-Chr11:13053925 | Cmo14g00196 | Cmo-Chr14:889620 | 1.52E-111 | dispersed | |
Cmo14g00196 | Cmo-Chr14:889620 | Cmo14g01296 | Cmo-Chr14:10837630 | 5.41E-114 | dispersed | |
Cmo16g00708 | Cmo-Chr16:3529729 | Cmo14g00196 | Cmo-Chr14:889620 | 5.02E-109 | dispersed | |
Cmo17g00694 | Cmo-Chr17:7056431 | Cmo14g00196 | Cmo-Chr14:889620 | 4.13E-114 | dispersed | |
Cmo17g01183 | Cmo-Chr17:9502242 | Cmo14g00196 | Cmo-Chr14:889620 | 5.55E-105 | dispersed | |
Cmo04g01048 | Cmo-Chr4:5233890 | Cmo14g00196 | Cmo-Chr14:889620 | 3.19E-104 | transposed | |
Cmo18g00662 | Cmo-Chr18:8407004 | Cmo14g00196 | Cmo-Chr14:889620 | 1.85E-110 | transposed | |
Cmo14g00196 | Cmo-Chr14:889620 | Cmo06g00365 | Cmo-Chr6:1771849 | 0 | wgd | |
Cmo14g00196 | Cmo-Chr14:889620 | Cmo07g00978 | Cmo-Chr7:4810001 | 1.67E-116 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10911 | PF12171 | zf-C2H2_jaz | 7.00E-05 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00196 | K25870 | - | csv:101213422 | 710.679 |