Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00198 ATGGGTAACATTGGTAGTAGCGGTTCCAATACCCGGAGAAGGCACGGTAGCCGCCGGGGCGGCCACCCGACTCCGCCTCCACCAGCCCCACCACAGCCCGAGATTACAAGTAATCGGTACGTTTTCGCTGCCGCTACGCCTTACCCATCTCAATACCCCAACCATCCGAATCACCCACCGCCGTATTACCAGTATCCTGGTTACTTTCCGCCGCCGCCGCCTGGTCCGCCGCCGTCGATGCCGATGTCTTTGCCGCCTCCTTACGATCACCACCACCGTGGAGCCCATCCCCACATGGATCCCGCGCATTGGGTCGGTGGGAGGTACCCTTATGGCCCTCCTATGCCGCCTCAAACGCCGTATGTTGAGCACCAGAAGGCGGTTACCATACGAAACGATGTCAATCTCAAGAAGGAAACTCTTAGGGTCGAGCCTGATGAAGAAAACCCCGGCCAATTCCTTGTAGCATTCACGTTCGATGCCACCGTCGCCGGAAGAGGCGAGGCAGAAGTTTCAAGTTACGGACTCGTTCAAGTCTTAGTGAAAGTAATAACGAGACGCCACCCGAGCCCTACTATCACCATCTTCTTCTTTGCAAAAGAAGGTGAAGATTGCAACTTGACTCCCGTAAAAGAAGACATTCTTCAACCAGTAACTGTCCATTTCGAACAAGGCCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCAGAATTTCTGAAAGTAAATGACACGGATGTCTATCCACTGGCAGTGAAAGCTGAGGCTTCCACTGACAGCCAAACTGGCCCAGATGGTACCTTGGTACCTGAGCCCATGAATGCTCAGATAACCCAGGCTGTGTTTGAGAAAGATAAAGGTGAATATCAGGCAAGAGTGCTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATATATGGCATTGGAAATTCAGTCGAGGGCGAGGTCGATGGAAATGACCCCGGAAAGGAATGCGTCATTTGCTTGTCTGAACCACGGGACACGACTGTACTTCCCTGCCGACACATGTTTATTGTAGATGATTCTTACGCTATTCACAATACTATGATCATATGGAAGCCTGTTTCACTTGGTTCTGTTTTATTTGAGCTGATATCTTCATGCCTACAAAAGTTATGTCTCCTGCACTCCTTTTGCATGTGTAGTGGTTGTGCTAAGGTGTTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCAGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAATAA 1314 50.0 MGNIGSSGSNTRRRHGSRRGGHPTPPPPAPPQPEITSNRYVFAAATPYPSQYPNHPNHPPPYYQYPGYFPPPPPGPPPSMPMSLPPPYDHHHRGAHPHMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENPGQFLVAFTFDATVAGRGEAEVSSYGLVQVLVKVITRRHPSPTITIFFFAKEGEDCNLTPVKEDILQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLAVKAEASTDSQTGPDGTLVPEPMNAQITQAVFEKDKGEYQARVLKQILWVNGMRYELQEIYGIGNSVEGEVDGNDPGKECVICLSEPRDTTVLPCRHMFIVDDSYAIHNTMIIWKPVSLGSVLFELISSCLQKLCLLHSFCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEE 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 896777 900315 - CmoCh14G001980.1 Cmo14g00198 395464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00198 437 SUPERFAMILY RING/U-box 338 358 - -
Cmo14g00198 437 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 165 - -
Cmo14g00198 437 PANTHER MAHOGUNIN 398 437 IPR045194 GO:0061630
Cmo14g00198 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 430 IPR013083 -
Cmo14g00198 437 PANTHER MAHOGUNIN 191 360 IPR045194 GO:0061630
Cmo14g00198 437 PANTHER MAHOGUNIN 1 165 IPR045194 GO:0061630
Cmo14g00198 437 MobiDBLite consensus disorder prediction 1 59 - -
Cmo14g00198 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 367 IPR013083 -
Cmo14g00198 437 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 398 437 - -
Cmo14g00198 437 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 191 360 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00369 Cmo14g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01437 Cmo-Chr6:10410455 Cmo14g00198 Cmo-Chr14:896777 7.23E-87 dispersed
Cmo14g00198 Cmo-Chr14:896777 Cmo14g01721 Cmo-Chr14:13462112 1.30E-71 dispersed
Cmo14g00198 Cmo-Chr14:896777 Cmo06g00369 Cmo-Chr6:1783768 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00198 - - cmax:111482503 591.267