Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00215 ATGTCACAACATTCTGAGGAGATTAAGACGACTGAGAAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTGATCCTCCTCCTCCTCCTCCTCCCAAACCATCACCCCCAACACCGAAACACACAGACCCCGAAGACCTCAGCTTCAAACAGGAGGAGGCTGAACACGGAATTGGCAGACCCATAAACGGAGAAATGGAATCTTCAACTGATTCCAAGAAGGAAAACGGTGGTGGCACCAGTGGGGAGAAACCTGAAGCCGTCACTTCCCTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGTTAGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTCCGTTTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTTTACTTCCTCGTGGTTGGAGCTGCGATATGGGCGTCGTCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCCGCACTGGACCAAGACATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACGGATGCAGTGATGGTCCAAGACGCCATTAGCGAGAAGCTGGGCAACTTCATCCACTATATGGCAACATTTGTGTCCGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGTCCCAGGAAGCTCTTTCAGAGGCTGGAAATATCGTCGAACAGACAATAGTTCAAATCCGAGTTGTTTTGGGGTTCGTGGGCGAATCAAGAGCGTTGCAGAGATACTCCTCCGCGTTGAAGATTTCTCAAAAGATAGGTTACAAGACTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTATTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTCGTCAGACACCACGCCACCAATGGCGGTCTGGCCATAGCCACTATGTTTGCCGTGATGATTGGCGGACTGGCATTGGGACAATCTGCTCCGAGCATGAGTTCGTTCGCAAAGGCTAGAGTTGCAGCTGCCAAAATCTATCGTATAATCGATCACAAGCCCACTCTAAACAGCAACAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTGGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAACTTCTCTCTAACTGTCCCTGCCGGAAAAACGATAGCTCTGGTCGGTAGCAGCGGCTCGGGCAAGAGCACCGTCATCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTTTACTAGATGGGCGTGACATAAAAACTTTGAAGCTGAGATGGCTAAGGCAGCAGATAGGACTGGTGAGCCAAGAACCTGCACTTTTTGCCACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAAGTTGAGGTGGAGGAAGCTGCTCGAGTGGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCGATCCTACTCTTAGACGAGGCTACTAGTGCATTGGATTCTGAGTCAGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTTATGATCGGGCGGACGACTCTTCTTATTGCCCATCGGCTCTCTACCATTCGTAAGGCTGACCTTGTGGCTGTAATCCAACAGGGAAGTGTTTCTGAAATTGGAACACATGACGAGCTCATTGCCAAAGGAGAGAATGGTGTATACGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGGCTTCAAGTGCCAGGAACTCAGTGAGTTCCCCAATCATTGCACGGAATTCTTCCTATGGACGATCGCCTTATTCACGTCGGTTATCTGACTTTTCCACATCTGATTTTAGTCTTTCTCTGGATTCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGGAGCAAGCCAGTTCCTTCTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTTTATGCATTACTTGGTTCTGTTGGTTCTGTTGTCTGTGGGTTTCTAAGCGCCTTCTTTGCATATGTTCTAAGTGCTGTTCTCAGTGTCTACTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTATTAATCGGACTTTCGTCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTCGGAGAGAACCTCACCAAACGTGTAAGAGAAAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAAAGTGCAAAAATTGCTGCTAGGCTGGCCCTTGACGCTAACAACGTTAGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACACGTCACTCATGCTAGTTGCATGCACAGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTTGTAGCCGTCTTCCCCGTGGTCGTTGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCTAACCATGCCAAGGCCACACAACTAGCAGGGGAAGCCATAGCCAATGTAAGGACAGTTGCTGCATTCAATTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTCGAGATCCCACTACGCCGCTGCTTTTGGAAGGGACAGATTGCTGGCAGCGGCTTTGGCGTTGCTCAGTTCTCTCTTTACGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCATGGGCTCTCTGATTTTTCGAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCCGCAAATGGCGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGCGGTCGAGCCATGCGATCCGTCTTTGCACTTCTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACTCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGCCCTGATATCCCCGTCTTCAGAGATCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCGAGCGGGTGTGGCAAGAGCTCTGTTATTGCATTAGTCCAAAGATTCTATGAGCCAACTTCAGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAACCTCAAGTCTCTGAGAAAGCACATTGCCATGGTCCCTCAGGAACCATGCTTATTTGCTGCTTCCATATCTGATAATATAGCTTATGGCCACGAATCAGCCTCTGAAGCTGAGATCATTGAAGCCGCTACTTTGGCAAATGCCCACAAGTTCATATCTGCATTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGGGGAGTTCAACTATCGGGTGGACAAAAACAAAGAATTGCAATTGCTCGTGCTCTGGTCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGTGCACTTGATGCTGAGTCTGAGCGGTCCGTCCAGGAGGCGCTCGACCGAGCTTGTTCAGGAAAAACAACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCCCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAGCAGGGATCACACTCACATTTGTTGAAAAATTATCCTGATGGGTGTTACGCCCGGATGCAAAAGGTGGAAGAAGCAGTTGCAGCAGCTAAAAATGAAGTTGAGAAGAAATCGGCGGCTGCTGTAGCTCCAGCTCCAGCTCCGGCGGCAGTTCCGGCAGTCGCGGAGGGTGGAGCGAAGAAAGAGGACGGCGGAGCTATCACCGCCGTATACAAAATCGACATGCATTGCGAAGGGTGTGCAAAGAAGATTAAACGAACTGTCCGACATGTCAAAGATGTGGAGAGTGTTAAGACGGATTGTGGAGCGAATAAGTTAACTGTGATTGGGAAAATGGATGTCGTTGCGGTGAAAGAGAAATTGGAGCTTAAAACCAAGAAGAAAGTGGAGCTTATTTCCCCGCAGCCGAAAAAAGACGGCGGCGCTGTCGCCGCCCCGGCGGAGAAGAAGGCCGATGAGAAGAAGCCGGAGGAGAAGAAAGCTCCTGAAGAAAAACCCAAAGAGAGCACTGTCGTCTTGAAAATCCGGCTGCATTGTGAAGGTTGCATACAAAAAATCCGCAAAATCATCTTGAAAATCAACGGGGTTCAATCGGTGGCTTTGGACGGAGCCAAGGATTTGGTCACCGTGAAAGGAACAATGGATGTGAAGCAACTCGAGCCGTATCTCAAAGACAAACTCAAAAGGAACGTGGAGGTTATCCCACCCAAGAAGGAAGAACCCGCCGGTGAAAAGAAAAAAGAAGAATCCCCTGCACCTGCCGCCGTGGTTGCTGTCCCCGTCGCCGTTGAAGCTGGAGGCGGTGAGAAGAAGAAGGAAGAAGCTGATGGCGGTGGTGAGAAAAAGGAAAAGGAAGGCGGCGGTGAGAAAAAGGAAGGCGGTGGTGAAAAAAAAGAGGCGGTGGAATCGAAACCTGCACCACCTCCCGCTGCCGCCGAGGGTGGCGGTGCAAAGCCGGTGGATGTAATGAACAAGTTAGAGTATTACGGCGGATATCCCTACCAACCACTATACTACGAGGCGCCGATGCAGTACCACCATAGCTACTCAATGGAAGCAAACCCGAGTTACTATACCCCCAACTACGGTTACGCTAACCATGGTTACACAGACCATAGATACGACGTCGTTCCAATGGACCACCACTTCCCTCACCACATGCAACAGGATCAGCCGCAGATGTTCAGCGATGAGAATCCCAACGCTTGTTCCGTCATGTAA 5136 48.31 MSQHSEEIKTTEKWKWSEMQGLELLSSDPPPPPPPKPSPPTPKHTDPEDLSFKQEEAEHGIGRPINGEMESSTDSKKENGGGTSGEKPEAVTSLGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKSQEALSEAGNIVEQTIVQIRVVLGFVGESRALQRYSSALKISQKIGYKTGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKARVAAAKIYRIIDHKPTLNSNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVISLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLLIAHRLSTIRKADLVAVIQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARASSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDSSLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASISDNIAYGHESASEAEIIEAATLANAHKFISALPEGYKTFVGERGVQLSGGQKQRIAIARALVRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMQKVEEAVAAAKNEVEKKSAAAVAPAPAPAAVPAVAEGGAKKEDGGAITAVYKIDMHCEGCAKKIKRTVRHVKDVESVKTDCGANKLTVIGKMDVVAVKEKLELKTKKKVELISPQPKKDGGAVAAPAEKKADEKKPEEKKAPEEKPKESTVVLKIRLHCEGCIQKIRKIILKINGVQSVALDGAKDLVTVKGTMDVKQLEPYLKDKLKRNVEVIPPKKEEPAGEKKKEESPAPAAVVAVPVAVEAGGGEKKKEEADGGGEKKEKEGGGEKKEGGGEKKEAVESKPAPPPAAAEGGGAKPVDVMNKLEYYGGYPYQPLYYEAPMQYHHSYSMEANPSYYTPNYGYANHGYTDHRYDVVPMDHHFPHHMQQDQPQMFSDENPNACSVM 1711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 979115 991077 - CmoCh14G002150.1 Cmo14g00215 395481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00215 1711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1090 1326 IPR003439 GO:0005524
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 26 41 - -
Cmo14g00215 1711 CDD ABC_MTABC3_MDL1_MDL2 435 674 - -
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1448 1472 - -
Cmo14g00215 1711 SMART AAA_5 462 648 IPR003593 -
Cmo14g00215 1711 SMART AAA_5 1117 1309 IPR003593 -
Cmo14g00215 1711 Coils Coil 1325 1345 - -
Cmo14g00215 1711 Pfam ABC transporter transmembrane region 770 1037 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo14g00215 1711 Pfam ABC transporter transmembrane region 113 385 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo14g00215 1711 Pfam ABC transporter 453 602 IPR003439 GO:0005524
Cmo14g00215 1711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1081 1327 IPR027417 -
Cmo14g00215 1711 Pfam Heavy-metal-associated domain 1376 1429 IPR006121 GO:0046872
Cmo14g00215 1711 Pfam Heavy-metal-associated domain 1479 1535 IPR006121 GO:0046872
Cmo14g00215 1711 Gene3D ABC transporter type 1, transmembrane domain 721 930 IPR036640 GO:0005524|GO:0016021
Cmo14g00215 1711 Gene3D ABC transporter type 1, transmembrane domain 1001 1335 IPR036640 GO:0005524|GO:0016021
Cmo14g00215 1711 Pfam ABC transporter 1109 1257 IPR003439 GO:0005524
Cmo14g00215 1711 SUPERFAMILY HMA, heavy metal-associated domain 1475 1530 IPR036163 GO:0046872
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1539 1556 - -
Cmo14g00215 1711 CDD HMA 1380 1416 IPR006121 GO:0046872
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1571 1608 - -
Cmo14g00215 1711 Gene3D ABC transporter type 1, transmembrane domain 98 689 IPR036640 GO:0005524|GO:0016021
Cmo14g00215 1711 SUPERFAMILY ABC transporter transmembrane region 99 413 IPR036640 GO:0005524|GO:0016021
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1539 1623 - -
Cmo14g00215 1711 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 400 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo14g00215 1711 CDD HMA 1482 1525 IPR006121 GO:0046872
Cmo14g00215 1711 SUPERFAMILY ABC transporter transmembrane region 754 1076 IPR036640 GO:0005524|GO:0016021
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1 16 - -
Cmo14g00215 1711 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 111 1332 IPR039421 -
Cmo14g00215 1711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 674 IPR027417 -
Cmo14g00215 1711 ProSitePatterns ABC transporters family signature. 1229 1243 IPR017871 GO:0005524
Cmo14g00215 1711 CDD ABC_6TM_Pgp_ABCB1_D1_like 111 408 - -
Cmo14g00215 1711 CDD ABC_6TM_Pgp_ABCB1_D2_like 757 1072 - -
Cmo14g00215 1711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 435 671 IPR003439 GO:0005524
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1 88 - -
Cmo14g00215 1711 SUPERFAMILY HMA, heavy metal-associated domain 1370 1438 IPR036163 GO:0046872
Cmo14g00215 1711 CDD ABC_MTABC3_MDL1_MDL2 1090 1325 - -
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 42 63 - -
Cmo14g00215 1711 Gene3D - 1372 1444 - -
Cmo14g00215 1711 Gene3D - 1472 1545 - -
Cmo14g00215 1711 Gene3D - 1079 1330 IPR027417 -
Cmo14g00215 1711 Gene3D - 425 675 IPR027417 -
Cmo14g00215 1711 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 111 1332 - -
Cmo14g00215 1711 MobiDBLite consensus disorder prediction 1437 1472 - -
Cmo14g00215 1711 ProSitePatterns ABC transporters family signature. 574 588 IPR017871 GO:0005524
Cmo14g00215 1711 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 767 1054 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02743 Cmo-Chr4:19865542 Cmo14g00215 Cmo-Chr14:979115 2.01E-85 dispersed
Cmo07g00470 Cmo-Chr7:2152115 Cmo14g00215 Cmo-Chr14:979115 3.18E-11 dispersed
Cmo08g00788 Cmo-Chr8:4963357 Cmo14g00215 Cmo-Chr14:979115 0 dispersed
Cmo13g00237 Cmo-Chr13:1892639 Cmo14g00215 Cmo-Chr14:979115 9.41E-35 dispersed
Cmo14g00215 Cmo-Chr14:979115 Cmo15g00292 Cmo-Chr15:1372725 2.07E-97 dispersed
Cmo15g00426 Cmo-Chr15:1925206 Cmo14g00215 Cmo-Chr14:979115 5.50E-86 dispersed
Cmo18g01380 Cmo-Chr18:12856335 Cmo14g00215 Cmo-Chr14:979115 9.65E-08 dispersed
Cmo20g00974 Cmo-Chr20:5407954 Cmo14g00215 Cmo-Chr14:979115 7.46E-87 dispersed
Cmo06g00387 Cmo-Chr6:1880723 Cmo14g00215 Cmo-Chr14:979115 9.43E-111 transposed
Cmo11g00342 Cmo-Chr11:1685235 Cmo14g00215 Cmo-Chr14:979115 2.04E-29 transposed
Cmo14g00313 Cmo-Chr14:1437074 Cmo14g00215 Cmo-Chr14:979115 5.13E-55 transposed
Cmo20g00324 Cmo-Chr20:1580698 Cmo14g00215 Cmo-Chr14:979115 5.45E-57 transposed
Cmo14g00215 Cmo-Chr14:979115 Cmo02g01423 Cmo-Chr2:8406957 1.43E-41 wgd
Cmo14g00215 Cmo-Chr14:979115 Cmo20g00545 Cmo-Chr20:2644299 7.97E-10 wgd
Cmo14g00215 Cmo-Chr14:979115 Cmo03g01208 Cmo-Chr3:9405045 2.08E-74 wgd
Cmo14g00215 Cmo-Chr14:979115 Cmo06g00386 Cmo-Chr6:1876018 1.68E-138 wgd
Cmo14g00215 Cmo-Chr14:979115 Cmo07g00930 Cmo-Chr7:4470687 4.95E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00215 K05658 - csv:101220974 2350.47