Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00235 ATGAAGCGGGAGTTGGCTTTTGATTTGGAGGTTCAATCTCAGCTTGAGGGGGATCTTGGTCATACTCGAAGTGAGACTCTAGCTGAGGTGAGGTCGGGTAGCTATTTAGACGAGGCTGCTCCGAGTGGTAGCTGCAAGAGATTTAAAGGCGCTGTTGTGAATGGTCTGATTGTATATACTAGGGGAAGGAAGTCTCCGATCAATGTGTACTGTGGGCTGTCGGAGAATGATAATAGGAAGAAGTGTTATAGCGGGGTTGAGCAGGAAATTCTTGGAAGCTTGGAAGTTGGGAAGGGCTGTATGAATCAGGAGGTTCAAATTCAAACTATAGTTTCGGATAAATTGAATTGCAATTCGAAGAGTTCTGACTGTAAGAAAGAGTCTGATGGGGCGATGGAAAAATCTGGAGATAAGGAAGAAGGAGCGGCGGGGAATCCTGAAGTTACTTCAAAGGCAAGAAAAGTTGAGGAAAGATTGTTTAGGTGGGGAATTAGGCGCGTTACACGCTCCTCATTAAGATCGAAGGTTGAGCTCGAGGAAGTCACAGTCACCCCAATTACAATAGGATCTGTTAAAGAGGAAGTTATTCCAGATGTCGGTGGAGAAACAAATGATACAGTCAACTCAGTGTCAACTCCGAAGAACAAGTTGGAATTAAAAATGTCCAAAAAGATTGCATTGAACAAGAAGCCAATGACTGTGAGGGAGCTGTTTGATACTGGTTTGCTCGAGGGGGTACCTGTCATCTACATGGGTGTAAAGAAGGTCATTCCTCCTTCACAATTTGAGATCCACGCTTGTAAACAATATAAACGAGCAGCACAGTATATATGTCTTGAGAACGGGAAGAGCCTACTCGACCTGGTGAGAGCATGCAAGAGAAGTAGGCAGACACTTGAGGCCACGGTACAAAGTCTGATTAGCTCTTCGCCTGAAGAAAAATGTTATACGTGTAGAGAGTGTAAAGGATGCTTTCCTTCATCCATTGGAAATGTGGGACCTTTATGCCCATCGTGCGAGGAATCAAAGCGATCTAAGTGTACACAGACACTGCCAATGCCCCTCACTTCCGCAATTGATAAGAGACCGAGGTCAACAGATCCAACCCCATCAAAATCATCTGGAAGTGTTCCAGTATATATCTCTTCACGATATAAACGCAAATGGGTAACAAAAGCAAAGTCAAAACCGTCCGAATACATTTCCATCTCAAGGTCCCCCAAAAGTGCACCAATGCGTATTCCTAAAAAGAATAAGAGTGCATTGAAGATGAGGAAGAAGTCATTGAAACCAGCTTCAATGCTAAAATCCTCCCAAAGTGCTTCAAAGTGTAGTTCTTCATTAGCTAAAAATCAGTGGAAAATAACAATGAAAGATCAGAGGTTGCATAAGTTGGTTTTTGAGGAAGACGGATTGCCTGATGGAACTGAAGTAGCATATTTTGCCAGGGCACAGAAACTGCTCCAGGGTTATAAGAAGGGATCTGGAATTTTATGTTGCTGCTGCAATTGTGTGGTTAGTCCTTCACAATTTGAACTTCATGCTGGCTGGTCTTCTCGCAAGAATCCTTATGCATACATTTACACATCAAATGGGATTTCTCTGCATGAATTAGCAATTTCTCTCTTGAAGGGGCGCAAGTATTCTGCTAAGGATAATGACGACTTGTGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCATAAAGAGTGTGCATCCTTATCAAGTGTTCCTCGTGGTGATTGGTATTGTAAATTTTGCCAGAATCTGTTCCAAAGAGAGAACCTTGTTGAGCATAATGCCAATGCTGTTGCAGCCGGAAGGGTGCATGGAATTGACCCTATTGAGCAGATAACTAAAAGATGCACTCGAATGGTTAGGAACATAGAAACAGATCTTAGTGGATGTGTGTTATGCCGTATTTCCTTTTACATCTTTGAATGCAGTGGCTCTGATTTCAGCAAATCAGGTTTTGGTCCCCTCACAATTATACTTTGTGATCAGTGCGAGAAGGAATTTCACGTGGGCTGTTTAAAAGACCACAAAATGGCATTTCTTGAGGAGTTGCTAATTCGTGGGCCAGAAAAGCTTCAGAATTCACTTTTGGATGCTGTCAATAGAAAACTTGTAGAAAATGGTTCAGACATTAAGACTAATGTTGATGTCAGTTGGAGGCTTATCAGTGGCAAAATTGCTTCACCTGAAACTCGGTTGTTGCTGTCAGAGGCCATTGCTATCTTCCACGATCGCTTTGATCCTATAGTTGATATAGCAAGTGGACGCGATCTTATTCCAGCTATGGTTTATGGGTTAGTGACAAGTTACTTCATTCTGATTTTTTGGTCTGGCTACTTCCAAACATTGTTTTCGTGCATCGAGAGGCTGCTAGCTTTCTTGAAAGTTAAGTGCCTTGTTCTCCCGGCTGCCGAAGAAGCTGAATCCATTTGGACTGAAAAGTTCGGTTTCAAGAGAATAAAACCAGATCAGCTCAGCAGCTATAGAAGAACTTGCTGCCAGATGTTAACTTTCAAAGGGACATCCATGCTTCGGAAAACGGTTCCTTCATTTCGGGCTGTAGCTCTTTCCATCACCATTGCCCTGCGCTCATTCCCGCCTTCCTTGACTGCCATCCTCGCCGCTGTCCGTCCTCAAGACGGTGCTTTTGAGCTTGGCATTTTCAGCAGTCTAGCGAAAGCGAGTGGTTCGGATGATCTCTTGTCTCTTGTGACTCAAATTTCGTCCAAATACTATCAGTTGAAGCATAAAAAAAATTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTTTGTACAATGTTTCACTCACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGCACTGTGCAAAGCGCAGTGGACGCTGTTCCTGATCATGCCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATCTACAGGGAGAAGGTGGTGATAGAAGCCAACAAGACAAACTTGATAATTCAAGGCCAAGGCTACCTCAACACTTCAATAGAATGGAATGACACTGCCAATTCCACGGGAGGTACCACTTACAGTTCTTCAGTCACAATCTTTCCCTCAAACTTCATTGCCTTCAACATCAGCTTCAAAAACACAGCTCCACAGCCAAATCCAGGGACTGTTGGAGGACAAGCAGTGGCACTTCGAATTGTAGGAGATGAAGCTGCTTTCTATGGATGTGGGTTTTATGGAGCTCAAGACACACTCTATGATGACAAGGGAAGACATTACTTCAAAGAATGTTTCATTCAAGGGTCCATTGATTTCATCTTTGGCAATGCTCGATCGCTCTATGATGGTTGTAGCATCAAGTCAATAGCAAAGGAAATGGTGGATGGCGGGGTGAGTGGAGCCATCACAGCACAAGGAAGGCAAACAAGAATGGAGGAAACTGGTTTTGCCTTCATCAACTGCACCATCAATGGCTCTGGGAAGGTGTGGCTTGGCCGTGCCTGGGGCGTCTCTGCCACTGTCATCTTCTCTAAAACATACATGACCGACGTGGTGGCTGCTGACGGATGGAATGACTGGGGACACCCTTCAAGAGACGAGAGTGTGTTGTTTGGGGAATATGAATGCTCTGGAGAAGGAGCAAATCGCAGCTTGAGAGTGCCATATTCAAAGCAGCTGAATCAAGTGGAGGCTGAGCCATACATGGATGTTTCCTACATTGATGGAGATCAATGGCTGATCCATCAACAAATTACCCTTTTCTCTTCTATTTAA 3780 43.7 MKRELAFDLEVQSQLEGDLGHTRSETLAEVRSGSYLDEAAPSGSCKRFKGAVVNGLIVYTRGRKSPINVYCGLSENDNRKKCYSGVEQEILGSLEVGKGCMNQEVQIQTIVSDKLNCNSKSSDCKKESDGAMEKSGDKEEGAAGNPEVTSKARKVEERLFRWGIRRVTRSSLRSKVELEEVTVTPITIGSVKEEVIPDVGGETNDTVNSVSTPKNKLELKMSKKIALNKKPMTVRELFDTGLLEGVPVIYMGVKKVIPPSQFEIHACKQYKRAAQYICLENGKSLLDLVRACKRSRQTLEATVQSLISSSPEEKCYTCRECKGCFPSSIGNVGPLCPSCEESKRSKCTQTLPMPLTSAIDKRPRSTDPTPSKSSGSVPVYISSRYKRKWVTKAKSKPSEYISISRSPKSAPMRIPKKNKSALKMRKKSLKPASMLKSSQSASKCSSSLAKNQWKITMKDQRLHKLVFEEDGLPDGTEVAYFARAQKLLQGYKKGSGILCCCCNCVVSPSQFELHAGWSSRKNPYAYIYTSNGISLHELAISLLKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSVPRGDWYCKFCQNLFQRENLVEHNANAVAAGRVHGIDPIEQITKRCTRMVRNIETDLSGCVLCRISFYIFECSGSDFSKSGFGPLTIILCDQCEKEFHVGCLKDHKMAFLEELLIRGPEKLQNSLLDAVNRKLVENGSDIKTNVDVSWRLISGKIASPETRLLLSEAIAIFHDRFDPIVDIASGRDLIPAMVYGLVTSYFILIFWSGYFQTLFSCIERLLAFLKVKCLVLPAAEEAESIWTEKFGFKRIKPDQLSSYRRTCCQMLTFKGTSMLRKTVPSFRAVALSITIALRSFPPSLTAILAAVRPQDGAFELGIFSSLAKASGSDDLLSLVTQISSKYYQLKHKKNCDEKKWNSELISLYNVSLTLTVDLKGCANFSTVQSAVDAVPDHASSRTLILIDSGIYREKVVIEANKTNLIIQGQGYLNTSIEWNDTANSTGGTTYSSSVTIFPSNFIAFNISFKNTAPQPNPGTVGGQAVALRIVGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYDGCSIKSIAKEMVDGGVSGAITAQGRQTRMEETGFAFINCTINGSGKVWLGRAWGVSATVIFSKTYMTDVVAADGWNDWGHPSRDESVLFGEYECSGEGANRSLRVPYSKQLNQVEAEPYMDVSYIDGDQWLIHQQITLFSSI 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1081221 1089944 - CmoCh14G002350.1 Cmo14g00235 395501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00235 1259 ProSitePatterns Pectinesterase signature 2. 1101 1110 IPR033131 -
Cmo14g00235 1259 Pfam PHD-finger 557 598 IPR019787 -
Cmo14g00235 1259 ProSitePatterns Zinc finger PHD-type signature. 557 596 IPR019786 -
Cmo14g00235 1259 MobiDBLite consensus disorder prediction 401 432 - -
Cmo14g00235 1259 ProSiteProfiles Zinc finger PHD-type profile. 554 599 IPR019787 -
Cmo14g00235 1259 PANTHER AUTOIMMUNE REGULATOR 792 867 - -
Cmo14g00235 1259 PANTHER AUTOIMMUNE REGULATOR 1 779 - -
Cmo14g00235 1259 Gene3D - 946 1258 IPR012334 -
Cmo14g00235 1259 MobiDBLite consensus disorder prediction 119 150 - -
Cmo14g00235 1259 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 792 867 - -
Cmo14g00235 1259 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 779 - -
Cmo14g00235 1259 SUPERFAMILY FYVE/PHD zinc finger 542 598 IPR011011 -
Cmo14g00235 1259 Pfam Pectinesterase 954 1245 IPR000070 GO:0030599|GO:0042545
Cmo14g00235 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 543 635 IPR013083 -
Cmo14g00235 1259 SMART PHD_3 644 706 IPR001965 -
Cmo14g00235 1259 SMART PHD_3 556 597 IPR001965 -
Cmo14g00235 1259 Pfam Tify domain binding domain 490 540 IPR032308 -
Cmo14g00235 1259 Pfam Tify domain binding domain 254 292 IPR032308 -
Cmo14g00235 1259 SUPERFAMILY Pectin lyase-like 949 1248 IPR011050 -
Cmo14g00235 1259 MobiDBLite consensus disorder prediction 119 141 - -
Cmo14g00235 1259 MobiDBLite consensus disorder prediction 350 377 - -
Cmo14g00235 1259 CDD PHD1_AIRE 556 596 - -
Cmo14g00235 1259 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00703 Cmo-Chr10:3224522 Cmo14g00235 Cmo-Chr14:1081221 1.95E-94 dispersed
Cmo11g00665 Cmo-Chr11:3199173 Cmo14g00235 Cmo-Chr14:1081221 1.58E-95 dispersed
Cmo14g01618 Cmo-Chr14:12855319 Cmo14g00235 Cmo-Chr14:1081221 1.78E-73 transposed
Cmo16g00538 Cmo-Chr16:2628087 Cmo14g00235 Cmo-Chr14:1081221 1.69E-129 transposed
Cmo17g00108 Cmo-Chr17:580652 Cmo14g00235 Cmo-Chr14:1081221 2.31E-61 transposed
Cmo14g00235 Cmo-Chr14:1081221 Cmo02g01406 Cmo-Chr2:8343868 0 wgd
Cmo14g00235 Cmo-Chr14:1081221 Cmo20g00564 Cmo-Chr20:2712965 0 wgd
Cmo14g00235 Cmo-Chr14:1081221 Cmo06g00409 Cmo-Chr6:1968813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10914 PF01095 Pectinesterase 8.70E-64 CL0268 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00235 - - csv:101203549 1314.29