Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00243 ATGGCAGATCCCGCGGCTCCAGACTCTACCACCAGCAACGCCTCTTCCGCCGCCGCCGCCGTCGCCGTTTCCGCCACTACCCCACCCGTAGTTACACCAGTTCCCAAACGTGCTTGGGGCGATGAAGAAGACGATGATGTAGGCGATGTTGGAGATTCATCCTCTGCGCCTTCCGAGTACATGGAATCTCTTAAAATCCAAGACGAAAAAACTCTTGAAGAACCCGAAGACTCTAACATCACAGCGGTGACAACTGGTGATACTCCATATTCATCAGCCAGTACTTTTGAGGATCTGAATCTATCTCCAGAGATTTTGAAGGGGTTGTATGTTGAGATGAAATTCCAAAAGCCAAGTAAAATTCAAGCTATAAGTCTACCTATGATCTTGACTCCTCCGTACAAAGATTTAATAGCTCAAGCACACAATGGTTCTGGAAAAACTACTTGTTTTGTGCTTGGGATGTTGAGTCGCGTTGATGTGAACTTGAAGGCTCCTCAGGCGTTTTGCATATGTCCTACAAGGGAGTTAGCCATGCAGAATATTGAAGTTCTTAAGAAAATGGGAAAATACACTGGGATAACTTCAGAGTGTGCAGTTCCTGCCGACAGTGCTAACTATGTACCTATGTCAAAGCGACCACCAATAACTGCACAAGTTGTGATTGGAACTCCTGGCACAATAAAGAAATGGATGTCATCGAGGAAGCTGGGAGTAAGTTGCGTGAAGATTCTTGTTTTTGATGAGGCTGATCATATGCTTAGCGAGGATGGCTTTAGGGATGATTCGTTGAGAATCATGAGGGACATTGAGAAAAGTAGCCCTCATTGCCAGGTGCTTCTGTTCTCTGCTACATTCGATGAGACTGTTAAAAACTTCGTCTCTAGGGTTGTCAAAGACTACAACCAACTTTTTGTTAAGAAGGAAGAACTATCCCTCGAGGGTGTGAAGCAATACAAGGTGATATGTCCAGATGAATTAGCAAAAATTCGGATCATAAAAGATAGAATTTTTGAACTTGGAGAGAAATTGGGTCAGACAATTATATTTGTGCGCACAAGAAACAGTGCAAGCATGTTACATAAGGCACTGGTTGATTATGGTTATGATGTGACTACCATTCAAGGGGCACTGACGACTGAAGATAGAGACAAAATAATAAAAGAGTTTAAGGATGGTTTGACCAAAGTTCTCATTTCGACTGACCTTCTATCTCGAGGGTTTGACCAGCAACAGGTCAATCTAGTTATCAATTATGATCTTCCTCTGAAATATGAATCTTCTTCGGAAGCGATGAAATTCAGATCTTCCTCACAATCTGAGCCTAACTATGAGGTGTACCTCCATAGAATTGGTCGGGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGCTCTGTGGTGATGTGGAGATCATGCGAATGGACAAAATTCAGAACCATTTTAACTCTGAAGTAACAGAGGTTCGGGACTCTGATGAGGACATTCAAGCAGCCTTGAGAACTGCTGGATTGCTTTGA 1524 43.5 MADPAAPDSTTSNASSAAAAVAVSATTPPVVTPVPKRAWGDEEDDDVGDVGDSSSAPSEYMESLKIQDEKTLEEPEDSNITAVTTGDTPYSSASTFEDLNLSPEILKGLYVEMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAVPADSANYVPMSKRPPITAQVVIGTPGTIKKWMSSRKLGVSCVKILVFDEADHMLSEDGFRDDSLRIMRDIEKSSPHCQVLLFSATFDETVKNFVSRVVKDYNQLFVKKEELSLEGVKQYKVICPDELAKIRIIKDRIFELGEKLGQTIIFVRTRNSASMLHKALVDYGYDVTTIQGALTTEDRDKIIKEFKDGLTKVLISTDLLSRGFDQQQVNLVINYDLPLKYESSSEAMKFRSSSQSEPNYEVYLHRIGRAGRFGRKGAVFNLLCGDVEIMRMDKIQNHFNSEVTEVRDSDEDIQAALRTAGLL 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1115222 1118356 - CmoCh14G002430.1 Cmo14g00243 395509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00243 507 PANTHER DEAD-BOX HELICASE DBP80 71 488 - -
Cmo14g00243 507 MobiDBLite consensus disorder prediction 1 94 - -
Cmo14g00243 507 CDD DEADc_DDX19_DDX25 101 304 - -
Cmo14g00243 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 470 IPR027417 -
Cmo14g00243 507 SMART helicmild6 358 458 IPR001650 -
Cmo14g00243 507 MobiDBLite consensus disorder prediction 77 94 - -
Cmo14g00243 507 CDD SF2_C_DEAD 316 467 - -
Cmo14g00243 507 Pfam DEAD/DEAH box helicase 120 292 IPR011545 GO:0003676|GO:0005524
Cmo14g00243 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 304 IPR014001 -
Cmo14g00243 507 Gene3D - 311 498 IPR027417 -
Cmo14g00243 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 123 IPR014014 GO:0003724
Cmo14g00243 507 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 71 488 - -
Cmo14g00243 507 MobiDBLite consensus disorder prediction 1 22 - -
Cmo14g00243 507 Pfam Helicase conserved C-terminal domain 329 458 IPR001650 -
Cmo14g00243 507 Gene3D - 74 310 IPR027417 -
Cmo14g00243 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 498 IPR001650 -
Cmo14g00243 507 SMART ultradead3 114 319 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00243 Cmo-Chr14:1115222 Cmo01g00057 Cmo-Chr1:200325 2.99E-65 dispersed
Cmo14g00243 Cmo-Chr14:1115222 Cmo14g00989 Cmo-Chr14:5325450 2.36E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00243 K18655 - csv:101222195 854.744