Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00244 ATGCGGGCTTTCTCTTCCTTGATCTTGGCCTTAGCTGCCGTTGTTCTGCCGGCGGCGGTGGTTTACTGCGGCTTCCCCGTCCCACTTCTCTCTCTGCAGAGGGCCTTCCCTTCTTCTCGCCCTGTCCAACTCGAAACCCTTAGAGCTCGGGACCGACTAAGGCATGCCAGAATGTTGCAAGGTGTCGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTGCTCATCGGGCTTTACTTTACGAAAGTTAAATTGGGCACTCCCCCGAGGGAATTTTCGGTGCAGATCGACACTGGAAGTGATATTTTGTGGGTGAACTGCAATTCCTGCAATGGATGCCCCACATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCCATCTCATCAAGTTCTTCACTCATCTCCTGTTCTGACCCAATATGCAATTCTGCATTCCAAACAACTGCAACACAGTGTCTATCTCAGAGTAAACAATGCAGTTACACCTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTCGACATGGTTATGGGACCTTCTATGATTGTTAACTCTTCAGCTACTGTTGTTTTTGGTTGTAGCACCTATCAGTCAGGAGACTTGACTAAATCTGACCATGCAATTGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGGTAACCCCTAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGTGGCGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTTGTGCCCTCTCAGCCTCACTATAACTTATACCTGCAAAGCATTGCTGTCAATGGTCAGACACTGTCAATTGATCCATCTGTGTTTGCAACATCAAACAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCATTTGTCAACGCTATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCGGGCAGTGCATCTATGGTGTTAAAACCTGAACAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATTTTAGGAGATATAGTTATGAAAGACAAGATATTTGTATATGATTTGGCTCGCCAGCGAATTGGGTGGGCAAATTATGATTGTTCCCAAGCTGTAAACGTATCAGTCACATCTGAGAAGAACAGGTTCGTGAATGCAGGACAGTTGAGCGTGAGCGGTTCGACTCGAGATAAACTCCTCCAATCATCAACTATGGGAGCATTAGCAGTGTTAGTGAGTCTCACCAGAGATTCCTGTAACTGTCATCGGCATTATTCCAAAGAAGGAAGTGATTACCAGACTTCAGGAGTTCGCGATTTCCCTGTTGTAATGGCGGCGGTTCCTCAGACGGCGGTTCATGCCTCTCCGGCTTCGCTCTATGTTGGCGACCTTCATCCTGATGTCACTGATGGTCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTTGCCTCTGTTCGTATCTGTAGAGATTCCGCTACTGGACGCTCTCTCTCTTATGGCTACGTCAATTTCATGTCTCCGCAAGACGCTACCAATGCGATAGAGGCAATGAATCACAGAATGCTCAATGGAAGAGCGATTCGAGTCATGTGGTCACGCCGCGATCCTGGTGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATGGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTAGTCACATCCGATGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAGTCTGAGGATTCCGCAAAAGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTCGGAAAGTTTATCTGGAAGAGTGAACGAGTCCTTGCCAATCCTGATGTTAAATACACCAATTTGTATGTGAAAAATCTTGACGCAGAGATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTTGGAAAAATCTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGCTTTATAAACTTTGTAAACTCTGATGATGCGAAACGGGCATTAGAAGCACTTAATGGATCGCAACTGGGTTCTAAGCATATCTACATTGCACGGGCGCAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTTACGAAGAGAAATGTAAAGAGCAGGGCTCAAATGTGTATGTGAAGAACATTGAAGATGGTGTTACTGATGAAGAACTAAGAGAGCTTTTCAGTCCGTGTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCCGACGAAGCTAAAAGAGCCGTGAACAGTCTGCAAGGATATATGTTTCACGGGAAGCCACTCTACTTGGCTATAGCACAAAGAAAAGTGGATAGACAAATGCAACTGAGGAATCAGTTTGCACAACGGATGGCAGCGATGCTAGGACAGTCAACACTTTTTCAGGGTGGATGCACACCTTATTATTACCCAGCACCAGGTGTTGTTCCACAAGTACCATCTCGTTCAGGTTTGACGTTTCAGCCTTTAGGAATGAACCCTGCGTGGAGAGCTAATGCCTTCACATCTCCTGCAAGACCTGCTTTTCAACCTACACCTGTACCTATTATTCCGAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATAAATGGACCAATGCTTTCTCATCAAAATGGTGTCCAATCTGTCTATTATATGCACAATTCACAAGATGCCCATCAACCAGGAGTTATAGATAAATCATCCGGCAATCAGCAGGTTAAGTATGTCCCAAATGCACGCCCATGTGAAAGAAACCAAACTTCTGGAGTCTCAGCTGCTGCTTTTAATTCTGCTGGAGATGTCTCTCAGGGATCCCAAATACTGAGCAGCATCCTTTCTTCCTCTCCCCCAGACCAACAAAAACAGATCCTTGGGGAGCATCTCTACCCCCTTGTCCAAAAATGCAAGCCGGAGCTAGCTGCGAAGATTACTGGGATGCTTCTGGAGATGGACAACTCGGAATTACTGCTTCTGTTAGAGTCACCTGAATCTCTAGTTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGAGTAAGCTGTCCAACCAAGACTCTGATTTCCATACCGGCTGA 3405 44.76 MRAFSSLILALAAVVLPAAVVYCGFPVPLLSLQRAFPSSRPVQLETLRARDRLRHARMLQGVVDFSVEGSSDPLLIGLYFTKVKLGTPPREFSVQIDTGSDILWVNCNSCNGCPTSSGLGIQLNFFDASISSSSSLISCSDPICNSAFQTTATQCLSQSKQCSYTFQYGDGSGTSGYYVSESMYFDMVMGPSMIVNSSATVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGVTPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLSIDPSVFATSNNRGTIVDSGTTLAYLVEEAYTPFVNAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEQYLMHLGFYDGAALWCIGFQKVQEGVTILGDIVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSEKNRFVNAGQLSVSGSTRDKLLQSSTMGALAVLVSLTRDSCNCHRHYSKEGSDYQTSGVRDFPVVMAAVPQTAVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSATGRSLSYGYVNFMSPQDATNAIEAMNHRMLNGRAIRVMWSRRDPGARKSGIGNVFVKNLSDSINGLGLQELFKKFGNVLSSKVVTSDDGKSKGYGFVQFESEDSAKAAIESLNGFTIGDKQIYVGKFIWKSERVLANPDVKYTNLYVKNLDAEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNSDDAKRALEALNGSQLGSKHIYIARAQKKTEREEVLRRRYEEKCKEQGSNVYVKNIEDGVTDEELRELFSPCGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNSLQGYMFHGKPLYLAIAQRKVDRQMQLRNQFAQRMAAMLGQSTLFQGGCTPYYYPAPGVVPQVPSRSGLTFQPLGMNPAWRANAFTSPARPAFQPTPVPIIPNASRQPRQNRGKINGPMLSHQNGVQSVYYMHNSQDAHQPGVIDKSSGNQQVKYVPNARPCERNQTSGVSAAAFNSAGDVSQGSQILSSILSSSPPDQQKQILGEHLYPLVQKCKPELAAKITGMLLEMDNSELLLLLESPESLVAKVEEAVQVLKISKSKLSNQDSDFHTG 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1119458 1128562 + CmoCh14G002440.1 Cmo14g00244 395510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00244 1134 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Cmo14g00244 1134 SUPERFAMILY RNA-binding domain, RBD 696 793 IPR035979 GO:0003676
Cmo14g00244 1134 CDD RRM4_I_PABPs 802 880 - -
Cmo14g00244 1134 Coils Coil 777 797 - -
Cmo14g00244 1134 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 526 1118 IPR006515 GO:0003723
Cmo14g00244 1134 Gene3D - 696 791 IPR012677 -
Cmo14g00244 1134 SMART rrm2_1 804 876 IPR003954 GO:0003676
Cmo14g00244 1134 SMART rrm2_1 706 778 IPR003954 GO:0003676
Cmo14g00244 1134 SMART rrm2_1 622 687 IPR003954 GO:0003676
Cmo14g00244 1134 SMART rrm2_1 527 600 IPR003954 GO:0003676
Cmo14g00244 1134 SMART rrm1_1 804 876 IPR000504 GO:0003723
Cmo14g00244 1134 SMART rrm1_1 615 687 IPR000504 GO:0003723
Cmo14g00244 1134 SMART rrm1_1 706 778 IPR000504 GO:0003723
Cmo14g00244 1134 SMART rrm1_1 527 600 IPR000504 GO:0003723
Cmo14g00244 1134 Pfam Poly-adenylate binding protein, unique domain 1053 1117 IPR002004 GO:0003723
Cmo14g00244 1134 Gene3D - 615 695 IPR012677 -
Cmo14g00244 1134 CDD RRM1_I_PABPs 527 606 - -
Cmo14g00244 1134 Gene3D - 515 614 IPR012677 -
Cmo14g00244 1134 SUPERFAMILY Acid proteases 76 441 IPR021109 -
Cmo14g00244 1134 SUPERFAMILY RNA-binding domain, RBD 526 693 IPR035979 GO:0003676
Cmo14g00244 1134 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Cmo14g00244 1134 Gene3D - 1042 1122 - -
Cmo14g00244 1134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 705 782 IPR000504 GO:0003723
Cmo14g00244 1134 CDD RRM2_I_PABPs 612 688 IPR045305 -
Cmo14g00244 1134 Gene3D - 792 893 IPR012677 -
Cmo14g00244 1134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 526 604 IPR000504 GO:0003723
Cmo14g00244 1134 SMART poly_2 1057 1120 IPR002004 GO:0003723
Cmo14g00244 1134 SUPERFAMILY PABC (PABP) domain 1009 1127 IPR036053 GO:0003723
Cmo14g00244 1134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 803 880 IPR000504 GO:0003723
Cmo14g00244 1134 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Cmo14g00244 1134 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Cmo14g00244 1134 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Cmo14g00244 1134 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Cmo14g00244 1134 CDD pepsin_A_like_plant 79 437 IPR034161 -
Cmo14g00244 1134 Gene3D Acid Proteases 266 444 IPR021109 -
Cmo14g00244 1134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 614 686 IPR000504 GO:0003723
Cmo14g00244 1134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 616 684 IPR000504 GO:0003723
Cmo14g00244 1134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 528 598 IPR000504 GO:0003723
Cmo14g00244 1134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 805 873 IPR000504 GO:0003723
Cmo14g00244 1134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 707 775 IPR000504 GO:0003723
Cmo14g00244 1134 PANTHER RNA BINDING PROTEIN 520 1125 - -
Cmo14g00244 1134 Gene3D Acid Proteases 63 265 IPR021109 -
Cmo14g00244 1134 PANTHER POLYADENYLATE-BINDING PROTEIN 520 1125 - -
Cmo14g00244 1134 SUPERFAMILY RNA-binding domain, RBD 799 895 IPR035979 GO:0003676
Cmo14g00244 1134 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1045 1122 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00265 Cmo-Chr1:1202405 Cmo14g00244 Cmo-Chr14:1119458 9.42E-12 dispersed
Cmo10g00885 Cmo-Chr10:4302170 Cmo14g00244 Cmo-Chr14:1119458 5.54E-95 dispersed
Cmo14g00244 Cmo-Chr14:1119458 Cmo15g00576 Cmo-Chr15:2753702 1.21E-141 dispersed
Cmo16g00375 Cmo-Chr16:1721565 Cmo14g00244 Cmo-Chr14:1119458 4.88E-22 dispersed
Cmo14g00244 Cmo-Chr14:1119458 Cmo02g01402 Cmo-Chr2:8313305 0 wgd
Cmo14g00244 Cmo-Chr14:1119458 Cmo20g00568 Cmo-Chr20:2756324 1.14E-177 wgd
Cmo14g00244 Cmo-Chr14:1119458 Cmo06g00420 Cmo-Chr6:2018132 0 wgd
Cmo14g00244 Cmo-Chr14:1119458 Cmo07g00916 Cmo-Chr7:4389137 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00244 K13126 - csv:101203793 1004.59