Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00246 ATGGCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGTAGCGGCGAGGCTTGCTGCTTCCGATCTCAGAGACATTAAAAGAGACGAGGAGAAGCACGCAGCGGCGCCTGGAACCGAGAAAAAAGCCACGGTGGAGGTCGTGGAGACGGACCGGGCGGCGGCACATGATCAGCAGCAGAGGTCCGGGGTGATCGGATCTGTACTGAAGGCGGTGCAGGACACGTATGAACACGCGAAGGAGGCGGTGGTTGGGAAGAGCCAGGAAGCGGAGGAGAGAGGCCAGGAGGTGAAGGACGCGTCGGCGGAGAAGGCAAGAGAGACGACGGAGGAGGCGAAGAGGAAAATGGACGAGTATGGAAGTGCAGCGGCAGAGAAGGCGAGGGAGACGAAGGAAGCCACCGGCGATACGGTGGCGTCGGCGAGAGGGAAAATGAGTGAATATGGAGAGAAAACGAAGAACAAGACAGGCGAATACACAGATTATGCGGCGGATAAGGCGAGGGAGACGAAGGACGCGGCGGCAAGAAAAGCAGGGGAATACAAAGACTATACAGCGGAGAAGACGACGGAGGCTACAGAATCCGCAAAAGGAAAGGCCGGCGAGTATAAGGATTACGCAGCGGAGAAGGCAAGGGAAGCGAAGGACGCTGCGGCCAGAAAAGCAGGGGAATATAAAGATTACACAGCGGAGAAGGCGAAGGAAGCGAAGGACGCTGCGGCGAGAAAAGCAGGGGAATACAAAGATTACACAGCAGAGAAGACTAGGGAAGCGACAGAATCGGCGAAGGGGAAGGCGGGTGAGTACAAAGACTACGCGGCGGAGAAGGCGAATGAAGCGAAGGAGAAGGCAGCAGAGTACAAGGATTACACGGAGGAGAAGGCGAAGGAGACGAAGGATGCGGCGGCAAGGAAGGCAGGGGAATACAGAGACTATACAGCGGAGAAAGCGAGAGAGACATCGGAGTACACGGAGGAGAAGGCGAAAGAAGGAAAGGACACGACAGTAAGCAAACTGGGGGAATTGAGAGATTCAGCGGCGGATGCTGCAAAGAGAGCCATGGAATACTTATCTGGAAAGAAAGAGGAAGCGAAGGAGAAATCTTTCGAGACTAAAGAAGCCGCCAAGGAATGGCAGGAAAAGATGGGCGAATCGGAGGAGGCCGCGAGGAGGAAGATGGAGGAGCTGAGGCTGGAGGGAGGAGGGAGCGACAGAGAAGAAGCAAAAGTGACACTCGAGCGTAATAGAGGAAGTGGCGGGAAGGGGGGAGACACGGTGGTGGTAGGGATGGAGGAGACAAGGCCGGGGGCGCTGGCCTCGACTTTGAAGCAGGCGGACGACATGGCGGGGCAGACTTTCAACGACGTTGGTCGAATGGACGAGGATCGTTCGAAGGATCGTCAGGGGAAAATGGTTTCATCAACAACCCGGGAGGAAGCTTTAGCGCGCAGCGGCCATGGTTCTCAAAAATCTATACCCCGTTTTCCGAGGGAGGAGAATACGACTGAGCTGTGTCGCTTCAGTGGCTCCAAGATATACCCAGGGAGGGGCATCAGATTTATCCGGGCTGATTCTCAGGATATTGCTCAAGAGGCGGTGAAGAAGAGGAGACGTACCACCAGGAAGCCATACTCGAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCCAGAGAAGCTGCTCTGCGGGAAATTAAGGAAAGAATCAAGAAAACAAAGGACGAAAAGAAGGCCAAGAAAGCGGAAGTGTTAGCCAAGTCCCAGAAGGCACCAGGTAAGGGTAACGTTGCGAAGGGACCTGCATCCAAAGGTCCAAAGCTCGGTGGTGGCGGTGGGAAGCGTTGA 1881 55.18 MASKEMKKERAEVAARLAASDLRDIKRDEEKHAAAPGTEKKATVEVVETDRAAAHDQQQRSGVIGSVLKAVQDTYEHAKEAVVGKSQEAEERGQEVKDASAEKARETTEEAKRKMDEYGSAAAEKARETKEATGDTVASARGKMSEYGEKTKNKTGEYTDYAADKARETKDAAARKAGEYKDYTAEKTTEATESAKGKAGEYKDYAAEKAREAKDAAARKAGEYKDYTAEKAKEAKDAAARKAGEYKDYTAEKTREATESAKGKAGEYKDYAAEKANEAKEKAAEYKDYTEEKAKETKDAAARKAGEYRDYTAEKARETSEYTEEKAKEGKDTTVSKLGELRDSAADAAKRAMEYLSGKKEEAKEKSFETKEAAKEWQEKMGESEEAARRKMEELRLEGGGSDREEAKVTLERNRGSGGKGGDTVVVGMEETRPGALASTLKQADDMAGQTFNDVGRMDEDRSKDRQGKMVSSTTREEALARSGHGSQKSIPRFPREENTTELCRFSGSKIYPGRGIRFIRADSQDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1132211 1136037 + CmoCh14G002460.1 Cmo14g00246 395512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00246 626 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 261 319 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 21 45 - -
Cmo14g00246 626 ProSitePatterns Ribosomal protein L24e signature. 506 523 IPR023442 -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 581 598 - -
Cmo14g00246 626 Gene3D - 147 199 - -
Cmo14g00246 626 Gene3D - 200 252 - -
Cmo14g00246 626 Gene3D - 277 334 - -
Cmo14g00246 626 Gene3D - 92 146 - -
Cmo14g00246 626 PANTHER DAUER UP-REGULATED-RELATED 1 264 - -
Cmo14g00246 626 Coils Coil 346 394 - -
Cmo14g00246 626 PANTHER DAUER UP-REGULATED-RELATED 310 463 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 581 626 - -
Cmo14g00246 626 Coils Coil 272 299 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 360 413 - -
Cmo14g00246 626 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 1 264 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 81 151 - -
Cmo14g00246 626 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 310 463 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 283 342 - -
Cmo14g00246 626 Coils Coil 574 598 - -
Cmo14g00246 626 Pfam Late embryogenesis abundant protein 143 180 IPR004238 -
Cmo14g00246 626 Pfam Late embryogenesis abundant protein 287 319 IPR004238 -
Cmo14g00246 626 Pfam Late embryogenesis abundant protein 181 224 IPR004238 -
Cmo14g00246 626 Pfam Late embryogenesis abundant protein 205 246 IPR004238 -
Cmo14g00246 626 Pfam Late embryogenesis abundant protein 225 257 IPR004238 -
Cmo14g00246 626 Pfam Late embryogenesis abundant protein 247 285 IPR004238 -
Cmo14g00246 626 Gene3D - 537 599 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 455 472 - -
Cmo14g00246 626 PANTHER DAUER UP-REGULATED-RELATED 261 319 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 360 426 - -
Cmo14g00246 626 Pfam Ribosomal protein L24e 501 529 IPR000988 -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 81 134 - -
Cmo14g00246 626 MobiDBLite consensus disorder prediction 453 500 - -
Cmo14g00246 626 Gene3D Ribosomal protein L24e 499 536 IPR038630 -
Cmo14g00246 626 Coils Coil 101 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00246 Cmo-Chr14:1132211 Cmo03g01179 Cmo-Chr3:9239837 3.98E-45 wgd
Cmo14g00246 Cmo-Chr14:1132211 Cmo06g00427 Cmo-Chr6:2050764 2.71E-49 wgd
Cmo14g00246 Cmo-Chr14:1132211 Cmo07g00908 Cmo-Chr7:4354545 9.98E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00246 - - cmo:103486554 534.258