Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00252 ATGATGCCGGCGAACATTTGCAGTTTCGCCGTCGCCCTCTTTCTCTCTCTTACCCTTTTGGCCTCTGCTTCTCTCTCTTTGGACGACGGCGACGACACCTCTGCTCTTACTCGCTTCCGTCTTCAAGCTGATTCTCACGGCGGCCTTCTAAGAAATTGGACTGGTTCTGATGCCTGTGCTTCTTCATGGCGTGGAGTTCAATGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAACTTACGAGGACCCATTGAGTCTCTTGCGCCGCTCCACCAGCTCCGCGTTCTCGACCTCCACGACAACCGTTTGAATGGTACCATTTCGCCGCTTCTGAACTGCACGAATCTCAAGCTGTTGTATCTCTCTGGCAACGACTTCTCTGGAGAGATTCCGCCGGAGATCTCTTCTCTACGGCGACTCCTAAGGCTAGATTTGTCAGATAACAACATCCGCGGCGGAATCCCGGAGGATCTCGCTAAATTGTCTCGGCTTCTTACACTCCGTTTGCAGAACAATGTTCTCTCCGGTACGGTGCCCGATTTCTCTGTTTCGCTTGTGAATCTCACTGAACTTAATTTAACCAACAATGAACTGTCCGACCGGTTACCGGACGGGATGATGAAGAAATTCGGCGAGAAGAGTTTCACTGGAAACGAAGGGATTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTGGTTCACCGCCGGAGATGGATTCTAGCAGAACGGTACCTTCAAATCCAAGCTCATTGCCGCAAAACCCTATCATCAGTTCATATAATAAAGAATCGCGAAAAGGGCTTAGCCCTGGCGCGATTGTCGCGATTGTGATCGCAAATTGCGTAGCGTTGCTTGTAATCATCTCGTTTATTGTGGCGTATTACTGCGCTCGTGATCGTGACCGGAGTTCAAGCTCCATGGCCGGAAGCGAGAGCGGTAAGAGAAGGAAGAGCGGAAGTAGCTACGGCAGCGAGAAGAAGGTGTACGCCAACGGCGGCGGCGACAGTGATGGCACTAACGCTACAGACAGAAGCAAATTGGTGTTCTTCGATTGGAAGAAGCAATTCGAGCTTGAAGATTTGTTGAGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACTGTTTACAGGGCGGTGCTGGACGACGGTTGTACGGTGGCGGTGAAGAGATTGAAGGACGCAAACCCATGTCCGAGGAAGGATTTTGAACAGTATATGGAGGTGATTGGGAAGCTTAAGCATCCAAATATTGTTAGATTGAGAGCTTTTTACTACGCTAAAGAAGAAAAGCTTCTGGTTTATGAATATCTTCCAAATGGGAGTCTTCATAATCTTCTCCATGGTTGGTTCATTGATGAAGCTTTTGATTGCTTACAACGGAATCGAGGGCCAGGGAGGATTCCATTGGATTGGACGACCAGGATCAGTTTAGTTCTTGGAGCTGCTCGTGGGCTAGCAGCCATCCATGGAGAATACAAAGCTTCAAACATTCCCCATGGCAATGTCAAATCTTCCAATGTTCTTCTCGACAAAAATGGAGTTGCTTGCATTTCCGATTTCGGGTTGTCTCTTCTTCTCAATCCCGTTCATGCCATTGCACGGTTGGGAGGATACAAAGCACCCGAACAAGACGAGACGAAACGACTCTCTCAAAAGGCAGATGTTTATAGCTTTGGAGTTTTGTTGTTAGAAGTCTTGACGGGGCGTGCTCCGTCGCTCTACCCGTCACCTTCGCGCCCACGTAACGACAAGGAAGAGTTGTCGGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACGGCTGAGGTGTTTGATCCGGAGCTATTGAGGTATAAGAACATTGAGGAGGAGCTTGTGTCTATGCTTCATGTGGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCGGAAGTGACAAAGATGATCGAAGATATTAGGGTCGAGCAGTCCCCGCTCGGAGAAGACTACGACGAATCGCGTAACTCGCTTTCGCCTTCCATTGCCGCCACAGAAGATGGTATGGCGTAG 2073 49.69 MMPANICSFAVALFLSLTLLASASLSLDDGDDTSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLHQLRVLDLHDNRLNGTISPLLNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDLAKLSRLLTLRLQNNVLSGTVPDFSVSLVNLTELNLTNNELSDRLPDGMMKKFGEKSFTGNEGICGSSPLPICSVTGSPPEMDSSRTVPSNPSSLPQNPIISSYNKESRKGLSPGAIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMAGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMEVIGKLKHPNIVRLRAFYYAKEEKLLVYEYLPNGSLHNLLHGWFIDEAFDCLQRNRGPGRIPLDWTTRISLVLGAARGLAAIHGEYKASNIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSRPRNDKEELSVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVTKMIEDIRVEQSPLGEDYDESRNSLSPSIAATEDGMA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1156523 1158939 - CmoCh14G002520.1 Cmo14g00252 395518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00252 690 Gene3D Ribonuclease Inhibitor 142 222 IPR032675 -
Cmo14g00252 690 Gene3D Ribonuclease Inhibitor 31 141 IPR032675 -
Cmo14g00252 690 Gene3D Transferase(Phosphotransferase) domain 1 444 679 - -
Cmo14g00252 690 MobiDBLite consensus disorder prediction 664 690 - -
Cmo14g00252 690 PANTHER LRR RECEPTOR-LIKE KINASE 6 681 - -
Cmo14g00252 690 Pfam Leucine Rich repeats (2 copies) 96 131 IPR025875 -
Cmo14g00252 690 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cmo14g00252 690 CDD STKc_IRAK 374 660 - -
Cmo14g00252 690 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 681 - -
Cmo14g00252 690 SMART LRR_typ_2 189 213 IPR003591 -
Cmo14g00252 690 SMART LRR_typ_2 94 118 IPR003591 -
Cmo14g00252 690 SMART LRR_typ_2 141 165 IPR003591 -
Cmo14g00252 690 Gene3D Phosphorylase Kinase; domain 1 341 443 - -
Cmo14g00252 690 SUPERFAMILY L domain-like 31 210 - -
Cmo14g00252 690 SUPERFAMILY Protein kinase-like (PK-like) 372 657 IPR011009 -
Cmo14g00252 690 MobiDBLite consensus disorder prediction 236 263 - -
Cmo14g00252 690 Pfam Protein kinase domain 372 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00252 690 ProSiteProfiles Leucine-rich repeat profile. 96 118 IPR001611 GO:0005515
Cmo14g00252 690 MobiDBLite consensus disorder prediction 308 342 - -
Cmo14g00252 690 ProSiteProfiles Protein kinase domain profile. 368 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00432 Cmo14g00252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00252 Cmo-Chr14:1156523 Cmo18g01016 Cmo-Chr18:10990716 1.59E-171 dispersed
Cmo14g00252 Cmo-Chr14:1156523 Cmo06g00432 Cmo-Chr6:2078694 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74825 PF00069 Pkinase 4.40E-33 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00252 - - bhj:120091526 1130.16