Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00269 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCTTCGACTGGCCGATGAGGCTGACCGCGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGAACCAATATCGCTCAATCCAGATTTCGAGCAAGCGATAGGGATCCGGGAAGCAGTGATTCTGGTCGAGTGGGGTATCAGCCTCAGCCGCCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACAGCCCTTGCTGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGATCTCTGCCACTATTTGTGCCAACATTCTCGAGGTTCCCACTGAGCAGAAGCTGCCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAAGTCGACCCATCTGTTCATACAAGCATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAGACTCTGCAGATTATCGAGAAAGAACTTGGCTTCGTGTCTAGCGGTAGTGCTTCTTCTGGGACCATAACCTCGAAGCCAGATTTGCAGGCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATTGAGAGGCAACGCCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGGTACTGGCGCAACAACTGTAACTCAGGATGTTGCCCAAGCCAAAATTAGTTCTGGACGCCCGTGGGCGGATACACCAATTAAAGGGCTTGATATTCAGCGTCCAGTTAGAGATGCACCTAATGATTTGGCACAAGAGAAGAACGTGGCCGCTGCATATCTAGACTATGAATGTGGTTCTGATCTTTCAAGGACATCAGGTGTTGGAAGGAGGGTCGTTGATGAAGGGCAAGACAAATCTTGGTCTTTAGCTGGAAACAATTTGGCTGAGAAATTATCTGGACAAAGAAATGGGTTCAACAACAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTGCACGTCTACTGCCCATGCAAAAATTTTCAAGCGGCAGCAGCAACAGAGTGTTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACCCTATGTTGACAGGTCATGGTGCACCTGCCATCGCCAGTAGCACCGGGAAGGATCAATGTACTCCTGAGGATTCGGATAATTCGGGTACTGACAATAAGCCATTAAGCATACGAGATACTGGGGCAAGTGTTGATAGGGAAGCTTCCTTTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAGTTCCAGGAGGCAATATCTCTGGATGGGCTGAGAGGCAGGGTTCCTAGAAAGAATTCAGCTCAATCAGGAGGTTATGGTGCCACTCTAACCGCAATGTCAGGTGCTAACTCTTCTGTGGATCAAATGGGAGGACGATCACAGATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAATAAAGGAGGTTCAGGGTCCCTTGGGACTGTAGGCCATCCAAGATTTCCATCACAAAGTGTTGCATTACCATCTGGACAGCCACCCTTGCACCAGCGCCCCCCTTCACCATTAGTGGATCATGTCGCTCATAAAAAACAAAGCCATAAAACTTCATTTCCTAATCTTGACCCACGTAGAAGGCATATACGGGATGCTGCCCTTGGCCTGCATCCCAACATTCGGCCAGATAACCTTCAAAAACCACAGCCTCAGGACCTACAAGCTTCAGCTTCATCCATACCTGCTTCTCAAACCAGGCACCGGTCACTGAAACCTGAAGTCACGCAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCGGACACCGATTTTGGACCGCCCTCATCGGCTGGGACAGTTCTAGAACTCTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAAAGTGGAATTTTGTCCAAGCATTCAATAATCAGTAGCATGCAACAGAATTTCAGCTCCCAAGATGTGGGAAATATGCAACCCCGTTCAAGCGTCAACCCTCCTCTACCAAGTCAGTCTTCTCCTGCCCATACTCAGTCTACATTCTCAGAGCCAAAGACTGTGGGCGAATCTTCATTAGGTCCTCCATCTCTTGAAAGCACATCAACGCTGGTTAAGTTATCTCAGATTAAGGTAGAAGACACACCGTTGCCATCTGATCCACTTCCTCCTTCATCTACTATGAATAGTGCATCCACTGAAACTTCAAATGTGGTAAACGATGATTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTCGCAAAGGGCCTCATATGTGCTTCTAAAGGAGAATTAGCAAGTAACGTTACATCCCAGATGCCTTCACAGCCTGAAAATTTGAAGTCGGGTGATGTTGTGACTTGTTCTATACCAGTTCCTTCCATCCCTATTCCCTCTTCCAGTCAATCATCTATAAGACCTGAATCACCTTCGAAAGCTGCTGCTCAGAGCTCCACTACTCCACCTCCATCTGCCACAACTGAGATAAACAACCTCATAGGCTATGAGTTTAGTTCACACGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATTTCAATGTAAGATCTGCGGTCTTAGACTGAAATGTGAAGAACGGTTGGATACGCACTTGTGGTGGCACATGTCAAGAACTGAGTCAAAAAATTCATGTAGGGCACCAAGAAGATGGTATCCAAGTTCAGTTGATTGGGTATCTGGAAATGCTAGACTTCTACTTGACGCTGCCTCTTCTCTGGACAAGTCCAGCATGATGGAAGAAGATAACGAGCCAATGGTTCCGGCAGATGAAGACCAATTTGCCTGTGTTTTATGTGGTGAGCTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAAGTGGATGTTCAAAGGAGCAATGCATATCACCATCCCATCAGTGGGTAGTGAGGTAGGAAGCACAAATGAACGAGTTGCTATAGGACCCATTGTGCACATAAGTTGCTTAACTGAAAGTTCAATACACGAGTTGGGACTGGCAACTGATATTAAGAAGGAAACGGATGTATGA 3240 46.3 MEMESSRRPFDRTREPGLKKLRLADEADRGGNINGRPFPQRPVVSGTNIAQSRFRASDRDPGSSDSGRVGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATICANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHTSMRHLFGTWKGVFPPQTLQIIEKELGFVSSGSASSGTITSKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDGTGATTVTQDVAQAKISSGRPWADTPIKGLDIQRPVRDAPNDLAQEKNVAAAYLDYECGSDLSRTSGVGRRVVDEGQDKSWSLAGNNLAEKLSGQRNGFNNKLGYENYPAPKSANTGARLLPMQKFSSGSSNRVLSTNWKNSEEEEFMWGEMNPMLTGHGAPAIASSTGKDQCTPEDSDNSGTDNKPLSIRDTGASVDREASFDSQSSEQRELGDSGQQRSSMWQFQEAISLDGLRGRVPRKNSAQSGGYGATLTAMSGANSSVDQMGGRSQITSSNIGASGHGFLNKGGSGSLGTVGHPRFPSQSVALPSGQPPLHQRPPSPLVDHVAHKKQSHKTSFPNLDPRRRHIRDAALGLHPNIRPDNLQKPQPQDLQASASSIPASQTRHRSLKPEVTQSELSSQHAVSIPDTDFGPPSSAGTVLELLPAEILGEPSTSSLLAAVMKSGILSKHSIISSMQQNFSSQDVGNMQPRSSVNPPLPSQSSPAHTQSTFSEPKTVGESSLGPPSLESTSTLVKLSQIKVEDTPLPSDPLPPSSTMNSASTETSNVVNDDSSPISNLLSSLVAKGLICASKGELASNVTSQMPSQPENLKSGDVVTCSIPVPSIPIPSSSQSSIRPESPSKAAAQSSTTPPPSATTEINNLIGYEFSSHVIRKFHPSVISGLFDDIPFQCKICGLRLKCEERLDTHLWWHMSRTESKNSCRAPRRWYPSSVDWVSGNARLLLDAASSLDKSSMMEEDNEPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGAMHITIPSVGSEVGSTNERVAIGPIVHISCLTESSIHELGLATDIKKETDV 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1213865 1221209 + CmoCh14G002690.1 Cmo14g00269 395535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00269 1079 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1065 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 787 805 - -
Cmo14g00269 1079 Gene3D - 72 202 IPR008942 -
Cmo14g00269 1079 Pfam CID domain 87 195 IPR006569 -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 420 443 - -
Cmo14g00269 1079 SMART 558neu5 80 202 IPR006569 -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 452 475 - -
Cmo14g00269 1079 SUPERFAMILY ENTH/VHS domain 77 200 IPR008942 -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 542 667 - -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 712 765 - -
Cmo14g00269 1079 CDD CID_Pcf11 82 194 - -
Cmo14g00269 1079 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 406 475 - -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 859 888 - -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 617 660 - -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 577 607 - -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 1 76 - -
Cmo14g00269 1079 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1065 - -
Cmo14g00269 1079 ProSitePatterns Zinc finger C2H2 type domain signature. 925 945 IPR013087 -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 777 805 - -
Cmo14g00269 1079 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00446 Cmo14g00269 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00752 Cmo-Chr13:7345150 Cmo14g00269 Cmo-Chr14:1213865 5.02E-34 dispersed
Cmo14g00269 Cmo-Chr14:1213865 Cmo18g00285 Cmo-Chr18:1867088 2.90E-32 dispersed
Cmo14g00269 Cmo-Chr14:1213865 Cmo06g00446 Cmo-Chr6:2134450 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00269 K14400 - csv:101223169 1681.0