Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00276 ATGTCTTCCTCCGCCCGCCACCCCATCTACAAAGGCATTCGCCAGCGCACCACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAACCCAACCGAATTTGGTTAGGAACCTTCCCAACTGCTGAAATGGCCGCCGTCGCATACGACGTCGCAGCCCTCGCCCTCAAAGGCCAGGACGCCGAGCTCAATTTCCCCAATTCCGCTGCTTCTCTCCCTGTCCCTGCCTCTCGCTCTGCTTCTGATATTCAAGCTGCCGCCGCATCCGCCGCCGCTGCACTTGGCGCAGCCGCCGCCGCTATGGAGGCACGCAATAATAACGGTCGCGCCCGTAGTAACTTCTCTGGAACTAACTCTTCGTACGGAACAAGATACAATGAAAATGAATTGGGAAATCAGTTCGTTGATGAAGATTTAATCTTCGATATGCCTAATGTTCTAATGAACATGGCCGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATGTCCACGGCAATGACGACCGCGACGACGGCGGTGATCAAAACCTTTGGAACTTTCCCTAA 546 54.21 MSSSARHPIYKGIRQRTTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSAASLPVPASRSASDIQAAAASAAAALGAAAAAMEARNNNGRARSNFSGTNSSYGTRYNENELGNQFVDEDLIFDMPNVLMNMAEGMLLSPPRFNVHGNDDRDDGGDQNLWNFP 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1249457 1250002 + CmoCh14G002760.1 Cmo14g00276 395542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00276 181 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Cmo14g00276 181 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700|GO:0006355
Cmo14g00276 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 181 - -
Cmo14g00276 181 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cmo14g00276 181 Pfam AP2 domain 8 58 IPR001471 GO:0003700|GO:0006355
Cmo14g00276 181 CDD AP2 8 68 IPR001471 GO:0003700|GO:0006355
Cmo14g00276 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 181 - -
Cmo14g00276 181 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Cmo14g00276 181 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Cmo14g00276 181 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00276 Cmo-Chr14:1249457 Cmo16g00158 Cmo-Chr16:718294 2.02E-44 dispersed
Cmo14g00276 Cmo-Chr14:1249457 Cmo14g00277 Cmo-Chr14:1253901 7.95E-30 tandem
Cmo14g00276 Cmo-Chr14:1249457 Cmo06g00454 Cmo-Chr6:2168177 2.77E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10921 PF00847 AP2 2.00E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00276 - - csv:101203380 233.032