Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00277 ATGCCTTCTTCATCCTCCAGCTCAACCAATGAACACCTTCCGCCGTCGCAGAAGACGGCCTCCACGAAGCGGAAGGCCGGCCGGAAAAAGTTTCAGGAGACCCGCCACCCGATTTACAAAGGCGTCCGCCAGAGAAATGGAAAATGGGTCAGCGAGCTCCGGTGGCCCAACAAAAATTCCACCTTTTGGGTCGGAACTTTTTGCACCCCGGAAATGGCGGCGGTGGCGTACGACGTAGTTGCCTTGACCATTAAAGGTGAGTCTGCACCACTCAATTTTCCAAATTGGACTCATTTATTTCCCAGAGTTAAGTCGTCGTCATCATCCATAAACGATATTCGAACGATGGCAGTGGAGGCGGCGGAGGCATTTACATCGAGCAATAGATTATCGTCTTTGTCGTCGTCATCGTTATGTTCTTCTTTGACGTCGGAGGAGAAGGTGATACCGGCAGTTTTAACGGATAGGTTGGTTTTGGATGAGGAGGAGGTGTTTAACATGCCAGCGATAATCGCCGGTATGGCGGAAGGATTGATTCTAACACCACCAGGAATGAAGAGAGGTTTTAACTGGGAGGAATACGAAGATACGGTGGAGTTGTCGTTATGGAACGACGACGGAGAGAAAAATTAG 633 49.76 MPSSSSSSTNEHLPPSQKTASTKRKAGRKKFQETRHPIYKGVRQRNGKWVSELRWPNKNSTFWVGTFCTPEMAAVAYDVVALTIKGESAPLNFPNWTHLFPRVKSSSSSINDIRTMAVEAAEAFTSSNRLSSLSSSSLCSSLTSEEKVIPAVLTDRLVLDEEEVFNMPAIIAGMAEGLILTPPGMKRGFNWEEYEDTVELSLWNDDGEKN 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1253901 1254533 - CmoCh14G002770.1 Cmo14g00277 395543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00277 210 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Cmo14g00277 210 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Cmo14g00277 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B-LIKE 5 204 - -
Cmo14g00277 210 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Cmo14g00277 210 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Cmo14g00277 210 MobiDBLite consensus disorder prediction 1 21 - -
Cmo14g00277 210 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Cmo14g00277 210 ProSiteProfiles AP2/ERF domain profile. 38 94 IPR001471 GO:0003700|GO:0006355
Cmo14g00277 210 Coils Coil 204 210 - -
Cmo14g00277 210 MobiDBLite consensus disorder prediction 1 38 - -
Cmo14g00277 210 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Cmo14g00277 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 204 IPR045277 GO:0003700
Cmo14g00277 210 SMART rav1_2 38 100 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00454 Cmo14g00277 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00277 Cmo-Chr14:1253901 Cmo15g01261 Cmo-Chr15:8654286 1.92E-37 dispersed
Cmo14g00276 Cmo-Chr14:1249457 Cmo14g00277 Cmo-Chr14:1253901 7.95E-30 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10922 PF00847 AP2 1.50E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00277 - - mcha:111014370 274.248