Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00327 ATGTCTATAAACCACTTCTCTCAAGACTTCCATCAGCCCCTCTTCTCATCTCCCCACCTCCCCATCATGCTTAGTAATAACCCCAAATCCTCCCTCTCTGACCACCTCAAGCAGCCCATGTTCGAGAAGCCCTTAACCCCGAGCGACGTTGGGAAACTCAACCGCCTCGTTATCCCCAAGCAGTACGCGGAGAGATACTTTCCCCTCTCACCCTCCTCCTCCTCCGCCGCCGCCGCCACTGCCCACTCGGCTGACAAGGCCTTGCTTCTCACCTTTGAAGATGAGTCTGGAAAGCTGTGGCGCTTCCGTTACTCTTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAGGGCTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCTGGTGATTGCGTCGTTTTTGAACGCCACCGCTCTGATGGCGACAGGTTGTTCATTGGCTGGAAGCGCCGCTCGGCGCCCTCTCCGGCGGAGACTGCTGTGGCGCCAAGTGGCAGTGGCGGTGGGTGTTGGACTAGAATGTTCTACTCTGCAAACCCATATCCTTCTCATCATCATCTTCCTTCACCGCCATACCAATCTTCGGGTTCTACTCTTCCAGAGTCGGTTCAGAGCCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGGGTGGACTTAGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGACGGTCGGAGGCGTGTCAAGTATATCGGGTCGGGATCCGACCCGCCACATTTTCTACTCACATTATTCTTCTGCCGTTCCTCATCACATGGTATGCCAACTCAACTTCATATTATAA 831 53.79 MSINHFSQDFHQPLFSSPHLPIMLSNNPKSSLSDHLKQPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLSPSSSSAAAATAHSADKALLLTFEDESGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDCVVFERHRSDGDRLFIGWKRRSAPSPAETAVAPSGSGGGCWTRMFYSANPYPSHHHLPSPPYQSSGSTLPESVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTVGGVSSISGRDPTRHIFYSHYSSAVPHHMVCQLNFIL 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1506867 1508297 - CmoCh14G003270.1 Cmo14g00327 395593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00327 276 CDD B3_DNA 39 143 IPR003340 GO:0003677
Cmo14g00327 276 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 32 236 - -
Cmo14g00327 276 SMART B3_2 41 154 IPR003340 GO:0003677
Cmo14g00327 276 ProSiteProfiles B3 DNA-binding domain profile. 41 154 IPR003340 GO:0003677
Cmo14g00327 276 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 236 IPR044800 GO:0003700
Cmo14g00327 276 Pfam B3 DNA binding domain 41 153 IPR003340 GO:0003677
Cmo14g00327 276 Gene3D - 30 161 IPR015300 -
Cmo14g00327 276 SUPERFAMILY DNA-binding pseudobarrel domain 38 154 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00327 Cmo-Chr14:1506867 Cmo16g00647 Cmo-Chr16:3189084 2.88E-48 dispersed
Cmo14g00327 Cmo-Chr14:1506867 Cmo06g00500 Cmo-Chr6:2406026 1.65E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10926 PF02362 B3 9.30E-30 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00327 - - bhj:120091802 396.356