Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00358 ATGGGGACCTACCTTCATGCCAATTCTGATCACTTCCAGTCTCCTGATGCTGCCCTTCAAACCCTCGTTTTAAGGAACCCAACCTATGTCCAATTCTCCGACACTCCGCCGCCTCCTCCGCCTCCCTCGCACCCTAATCTCCTTTTCTTCAATTCCCCTGCTTCTGCCCCTGCTGCTCCTAATTCCTTCTCTATACAGCAATTCGTTGGAATCCCCACGTCCCAAGATGACAATTCCCATTCCTTGAACCCCCACCATGACATCTCCGCCTTGCACGGCTTTCTCCCCCGTGTTCAACACAATATTTGGAATTCAATTGACACTTCCACGGCGGCGCGTGATTCTTCACGCGCTCAGCAGGGTTTGTCGTTGAGTCTCTCTTCGCAACACCCTCCTGGTTTTGGGTCGAGAGATGTTGTTCAATCGCATACCCAGCAGGCGGTTTCTGGTGAGGAGACTCTGCGGATCTCTGGTGGATCGTCTTCTTCGGCTTCTGGTGTTACCAATGGCGTTGCTGGAATTCAGGGTGTTTTAATTAGCTCTAAGTATCTCAAGGCTGCGCAAGAACTTTTAGATGAGGTTGTCAATGTTAGCCAAAATGGAATTAAGAACGAATCGTCTCCCAGAAAGGGAAACAGACATCAAACTAAGATGAACGGAGATGCATCCGCTGCTACTGGAACTGCTGATGGTTCCTTAGAAGGTGAAGCCGACGGTAAACGCGCCGTCGAGCTCACCACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGTAAAGCTTATTAGCATGCTTGATGAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCACTTTCGAGCAGGCGGCCGGCGCCGGGTCGGCGAGAACCTACACGGCCCTTGCACTTCAAACGATCTCAAAGAAATTTCGCTGTTTAAAAGACGCCATCGCCGGCCAAATTCGAGCAGCCAGCAGGAGCTTGGGTGAAGAAGAATGCGTCGGAAAAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATCACCATCTCCGGCAACAGCGGGCTCTGCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCGGAGCGCTCTGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCACCCTTACCCTAAGGATTCGGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCCGAAGCCAGGTTTCGAATTGGTTCATAAACGCGAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAGGAGCAAGAACAGAACGGAGGTGGATCGACACCGGCGACGGTGGGGGAAAGAAACAACGAAGATTCAGTTTCAAAGTCCATGGAGACAAAAAGCCCCAATTCAAAACAAGAGAATTCCCCGAACCAAAACGTTCATCCTTCAGTTTCAATTTCAAATTCCTCCGGGGGAAATGTCCGAAACCCATCTGGGTTTACACTAATTGGAACCTCATCGGAGCTGGATGGAATCACTCAAAGAAGCCCCAAGAAACAGAGAGGCCCCGAAATCCTCCATTCCTCAGACAACAGCGTGGCATTCATAAACATGGACATCAAACCCCGAGAAGAAGGAGAAGGACAGAATCAACAGAATCAGAACCAAAATCACGATGTACCAATGAAATTCGACGAGGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACCTCGGCGGATTCGGGCAATACCCAATAGGGGAAATGGCGAGATTCGAGGCGGATGAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTGTCTTTGACTCTAGGGCTTCCCCATTGCGAAAATCTGTCCTTAAACGCAGCAACCCACCAAAGGTTCCTCCCAAATCAGAGCATCCAATTAGGAAGAAGAACAGAAATTGGAAAAGCCGCCGATTATTCCGCCATGAACGCCTCCACAACAGCGCACTCCTCCGCCGCCTTTGATACCATGAACATCCAAAATGGAAAACGTTTCGCCGCCCAGTTACTGCCGGACTTCGTGGCCTAA 2079 49.88 MGTYLHANSDHFQSPDAALQTLVLRNPTYVQFSDTPPPPPPPSHPNLLFFNSPASAPAAPNSFSIQQFVGIPTSQDDNSHSLNPHHDISALHGFLPRVQHNIWNSIDTSTAARDSSRAQQGLSLSLSSQHPPGFGSRDVVQSHTQQAVSGEETLRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVSQNGIKNESSPRKGNRHQTKMNGDASAATGTADGSLEGEADGKRAVELTTAERQEIQMKKVKLISMLDEVEQRYRQYHHQMQIVISTFEQAAGAGSARTYTALALQTISKKFRCLKDAIAGQIRAASRSLGEEECVGKKMEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGSTPATVGERNNEDSVSKSMETKSPNSKQENSPNQNVHPSVSISNSSGGNVRNPSGFTLIGTSSELDGITQRSPKKQRGPEILHSSDNSVAFINMDIKPREEGEGQNQQNQNQNHDVPMKFDEERQNRDGYSFLGQPHFNLGGFGQYPIGEMARFEADEFTPRFSGNNGVSLTLGLPHCENLSLNAATHQRFLPNQSIQLGRRTEIGKAADYSAMNASTTAHSSAAFDTMNIQNGKRFAAQLLPDFVA 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1624151 1627502 + CmoCh14G003580.1 Cmo14g00358 395624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00358 692 Coils Coil 250 270 - -
Cmo14g00358 692 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 644 - -
Cmo14g00358 692 MobiDBLite consensus disorder prediction 440 514 - -
Cmo14g00358 692 Pfam Associated with HOX 177 317 IPR006563 -
Cmo14g00358 692 MobiDBLite consensus disorder prediction 201 239 - -
Cmo14g00358 692 SMART prehox3 172 318 IPR006563 -
Cmo14g00358 692 SMART HOX_1 366 430 IPR001356 GO:0003677
Cmo14g00358 692 SUPERFAMILY Homeodomain-like 367 433 IPR009057 -
Cmo14g00358 692 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677
Cmo14g00358 692 CDD homeodomain 366 427 IPR001356 GO:0003677
Cmo14g00358 692 MobiDBLite consensus disorder prediction 437 534 - -
Cmo14g00358 692 MobiDBLite consensus disorder prediction 32 47 - -
Cmo14g00358 692 MobiDBLite consensus disorder prediction 29 52 - -
Cmo14g00358 692 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 11 644 - -
Cmo14g00358 692 MobiDBLite consensus disorder prediction 114 167 - -
Cmo14g00358 692 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Cmo14g00358 692 Gene3D - 369 445 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00525 Cmo14g00358 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00107 Cmo-Chr5:431215 Cmo14g00358 Cmo-Chr14:1624151 7.51E-47 dispersed
Cmo12g00574 Cmo-Chr12:3539266 Cmo14g00358 Cmo-Chr14:1624151 2.07E-43 dispersed
Cmo13g00245 Cmo-Chr13:2012539 Cmo14g00358 Cmo-Chr14:1624151 6.32E-71 dispersed
Cmo14g00358 Cmo-Chr14:1624151 Cmo20g00834 Cmo-Chr20:4158381 1.04E-103 dispersed
Cmo20g01176 Cmo-Chr20:11619666 Cmo14g00358 Cmo-Chr14:1624151 2.26E-73 dispersed
Cmo14g00358 Cmo-Chr14:1624151 Cmo02g01345 Cmo-Chr2:8012929 1.69E-155 wgd
Cmo14g00358 Cmo-Chr14:1624151 Cmo06g00525 Cmo-Chr6:2534813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10929 PF07526 POX 1.40E-48 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00358 - - csv:101208201 1070.07