Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00363 ATGCATTTAACTCGTCGGGCGAGTCGCGTTGATCCGGCAAGGCGATTTGCTCCCGCCAGCTGGCGTTGGTCACTGCCTGCAGCTGAAAGAAAGGGAGGCATGGATCCGGCAAATACACCACTGGGCAGGATGCTGCTGGAAGAGATCACTCCGGTTATCATGGTGCTGAATACCCCACTTGTTGAAGAAGCCTGCCTGAAGAATGGTCTCTCATTCATCCAGATGCTCAGCCCCTTCTGCTCGTTTAACAACATTGACGTGCCCGTACGGACCGCTAGTGATCAACCTTACAGGATTAAGAAATTCAGTTCACGGTTGTTTTACGGTTCGGACATTCATCAACCAAATTTCGAGGCATCAAAAGAGCGACTGAAACAAGTCATTACACAAGCCAGCGAGAAAGATCTTTCTAAACTATGTTCTGATCCACCTCAAATTAATGAAGCAGTTGACTGTTTTGAGTCTGCAATTCTACCTTCGTGGTTTCAGTTATTTAACAAAGAGCTTATACGTAATGTATCCTTTTCAGAACATGAAGCTTTTGACCATCCTGTGGCATGTCTTTTGGTTGTCTCTTCAAGCGATGATCATCCTGTCAACAAATTTGTTGACCTCTTTAACACAATCAAATTGGCCTCTCTTCTAGATGATGGTGCCACGGACCTTAAGATTATGAAGCATTATTTGTTGTTGCATGATAATCAAGATGGCTCTTCAGAGAAGGCAAGTAAAATACTAACTGAAATGAGGAGTGCGTTTGGTTCGAATGACTGCCAATTACTTTCAATCAATTCTTCTCATGATGAACTCATTGAACGGGAAGATGATCCTTGGGGTTTGTTTAAGCCCGATGCTTCGACTGGTAAGCAACTTGGCTGCTTTCTTAGCAATGAGGATCTAATTGAGATCAGAGAGTTAATGCAAGATTTTTCGTCGAAACATATCATTCCTTACATGGAGCAAAAAATACGAGCATTAAACCAACAGGTGTCTGCTACAAGGAAAGGTTTCAGAAATCAGATAAAAAACTTATGGTGGAGAAAGGGGAAAGAAGACACAGTAGATTCTCCAACCGGCCCAACGTATACCTATAACTCTATTGAGTCTCAGATTAGAGTTTTGGGTGACTATGCCTTCATGTTGCGGGATTATGAACTTGCATTGTCCAATTATCGCCTGATTTCTACTGATTACAAACTTGATAAAGCTTGGAAACGCTATGCTGGTGTCCAGGAGATGATGGGGCTTACGTACTTTTTGCTAGATCAATCAAGGAAGGAAGCTGAGTATTGCATGGAAAATGCCCTCAATACTTATTTGAAAATGGGCCCGTCTGGTCACCTAAATGCAACACGCTGTGGTCTTTGGTCAGCAGAGATGTTGAAGGCAAGAGAGCAATACAGAGAGGCTGCTGCTGTTTATTTCCGTATTTGTAATGAGGAACCTTTACATTCAGCTGTCATGCTTGAGCAAGCATCTTACTGTTACCTGCTTTCTAAACCTCCTTTGATACGCAAATATGGATTTCATCTTGTTCTCTCTGGTGATCGTTACAAAAGAATGGATCAAATTTACCATGCAATTCGTACATATAGAAATGCAATTGCTGTTTTTAAAGGAACAGAATGGAGCCACATCAAAGATCATGTACATTTCCATATTGGACAGTGGTATGCTTCGCTTGGTCTATATGACGTTGCTGTTACTCAAATGCTGGAAATTCTCGACTGTAATCATCAGTCAAAGGCAACGCAGGAATTGTTTCTAAAGGATTTTCTTAAAATTATTCAGAAGGCAGGAAAGACAGTCAAGGTGTTAAAACTACCATTGCCCAAGATCAGCATTTCATCATTAAAGGTCATCTTTGATGATCATCGAACTTATGCATCACCTACGGCTGCTAATGTTCGAGAAAGCGTATGGCGCTCATTGGAGGAGGACATGATTCCATCGTTATCATCAGGAAGGACAAATTGGTTGGAGTTACAGTCAAAGATTATGTCGAAAAAGTATAAAGAATCAAATATCTGTGTGGCAGGAGAACCTGTGAAAGTGAATATCGTATTTAAAAACCCTCTTCAGATCCCTATTTCCATCTCTTGCGTTTCCCTGATATGTGATCTTTCTTCAAAATCTGATGGAACTAAATCTGATACAAATAACATAACTGCTGGTTTCCAGAATAATACTGAACTCAAGTGGTCATCTGATTGGGAGATGGGAACTAACAATGCTTCATTTACTTCGACAGAAGTTCACCTCTCATTAGAAGGAAATGAAGAAAAAGTTGTGCAACTGACAGTTACTCCCAAAATAGAAGGCATCCTACAAGTTGTTGGTATTAGGTGGAGACTGTCCGATTCTATCATGGGCTTTCACAATTTTATTAACAATTTAGGACAGAAGAATATTGCGAAGGGGAGACAGAAAGTTAAGTATTCTCTTGCTGATAACCTGAAGTTTATAGTGATCAAGAGTCTTCCAAAGCTTGAGGGCAGCATTCTTTCACTTCCTAAAGTCGCATATGCTGGAGATTTACAGCGCCTTGTCCTTGAACTGACAAATCAATCTAAATTTTCTGTAAAGAATCTGAAAATGAAGATCAGTCAATCACGATTCTTGAAAATTGGGAAGCAAGAAAATATGAATGCAGACTTTCCTGCTTGCTTGGAGAAGCCAATTAATAGCGAACAGGGAGTACGCCCTATACCTAATACAACATCAAATGATACATTTTTGTTTCCAGAGGACACTTCAATTCAAGGCGGAACACCCTTATTGTTGCCCCTTTGGCTTCGAGCTGCTGTTCCTGGAAATATATCCTTATACATAAGTATATATTATGAGATGGAAGGTGTATCAGATATCATGAGATATCGCATTCTACGCATGCATTACAATATTCAGGTTTTGCCATCCCTGGATTTATCGTTCCAAATCAATCCATGTCCATCAAGATTGCATGAGTTTCTTGTCCGAATGGATGTTATGAACAAGACTAGCTCCGAGGTTTTCCAAATTCATCAGTTGTCATCTATTGGACAGAACTGGGAACTTTCGTTACTTCAACCTGTTGATAGTATTTTTCCTTCTCGAGCTTTGATGCCTAATCAAGCATTGTCATGTTTCTTCGTTCTCAAGAATGTTAACAAATCGTTCAGTTCTGAAAAAAAAGTATCTTCTGTCCCGGTGCTACTTGGAAGTGATCTAAAGTTGGGTTCTCAGAGTAGCGATGAACAGCTCTTTGATACGGCTAATTTTCCTCTAGCTGCTTTCCATTATTCTGAAAGAGCATACCAAGGAACTTCAAACCAGGACCTAAATACAGTAGACTTTATATTGATCACTCGGCCACTTAAGAATACTACTGATCCTGGAATTTCTGAATCATCGCGTCTATTCTCTCATCATGTGTGCCATTGCAGTACTTCAAGTCACAGTCCTATATCTTGGCTACTTGAAGGGCCTCGGAGTTCATATCACAACTTCTCTTCTTCTTTCAGCGAAATCAATTTCAAAATGACAATCTATAACTCTTCAGATTCAATTGCATCCATACGCATTAAAACAATTGACTCAGCTGAAGGTAATGAATCTGCTCCTCCATCCCCTAGCTCCGCTAACCAAACAGGATGGCACTATGCCTCACTTACACAGGACATTAAGGTCACATCTGATGTTCTGGGAGCACAAATGGCCAAGTCATCTTCACTTGAAAGTGTTTCTCCATTTATCTGGTCCGGAACAAGCTCAACAACACTACAAATTGAACCCAACTCCATGGCTGAAGCTCCTCTCCAGATCTGTATCTTTTCTCCTGGAATATATGATCTCTCAAACTATATTTTACAGTGGAAACTTCTACCGTCATCTCGATCAGGAAACGACGAAACTAGCGTCGCATCAGGAACTTGCCAGGGCTATCCATACTATCTCACTGTCCTTCAGTTGCAGAAGAAATTCAAAGGGCTGCCAATGAACGATTTGTTCTCTTCTCGCTCTTTCTCCCGCGACAGCCATGTCGTTGAGATGGGCAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGATAAGTTCTTTGAAGATGTTGAGTCCGTTAAAGATGAGCTGAAGGAGCTTGATCGACTCTGCAGCAAACTCCATGACTCCCATGAACAGAGCAAGACGCTTCACAATGCTAAGGCTGTCAAAGACCTCCGATCTCGTATGGATTCCGATGTTTCTCTTGCCCTCAAGAAGGCCAAACTCATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGCTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAACAGATCTCCTCCGAGTACAGGGAGACCGTTCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGACATATTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAAGAACCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAGCAAGGTGAGAAACTCGACGACATCGAGAGCCACGTGAACCGTGCTCATTCTTTTGTCCGAGGTGGTACACAGGAGTTGACTACAGCCAGAGTGTACCAGAAAAACACCCGAAAATGGACAATTATTGGCATCATCATTTTGCTCATCATTGTCTTGATTATTGTCCTCAGCCTTCGCCCTTGGAAGAACAACAACAGTAGCTCATCCACAACACCCTAA 4896 42.14 MHLTRRASRVDPARRFAPASWRWSLPAAERKGGMDPANTPLGRMLLEEITPVIMVLNTPLVEEACLKNGLSFIQMLSPFCSFNNIDVPVRTASDQPYRIKKFSSRLFYGSDIHQPNFEASKERLKQVITQASEKDLSKLCSDPPQINEAVDCFESAILPSWFQLFNKELIRNVSFSEHEAFDHPVACLLVVSSSDDHPVNKFVDLFNTIKLASLLDDGATDLKIMKHYLLLHDNQDGSSEKASKILTEMRSAFGSNDCQLLSINSSHDELIEREDDPWGLFKPDASTGKQLGCFLSNEDLIEIRELMQDFSSKHIIPYMEQKIRALNQQVSATRKGFRNQIKNLWWRKGKEDTVDSPTGPTYTYNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFLLDQSRKEAEYCMENALNTYLKMGPSGHLNATRCGLWSAEMLKAREQYREAAAVYFRICNEEPLHSAVMLEQASYCYLLSKPPLIRKYGFHLVLSGDRYKRMDQIYHAIRTYRNAIAVFKGTEWSHIKDHVHFHIGQWYASLGLYDVAVTQMLEILDCNHQSKATQELFLKDFLKIIQKAGKTVKVLKLPLPKISISSLKVIFDDHRTYASPTAANVRESVWRSLEEDMIPSLSSGRTNWLELQSKIMSKKYKESNICVAGEPVKVNIVFKNPLQIPISISCVSLICDLSSKSDGTKSDTNNITAGFQNNTELKWSSDWEMGTNNASFTSTEVHLSLEGNEEKVVQLTVTPKIEGILQVVGIRWRLSDSIMGFHNFINNLGQKNIAKGRQKVKYSLADNLKFIVIKSLPKLEGSILSLPKVAYAGDLQRLVLELTNQSKFSVKNLKMKISQSRFLKIGKQENMNADFPACLEKPINSEQGVRPIPNTTSNDTFLFPEDTSIQGGTPLLLPLWLRAAVPGNISLYISIYYEMEGVSDIMRYRILRMHYNIQVLPSLDLSFQINPCPSRLHEFLVRMDVMNKTSSEVFQIHQLSSIGQNWELSLLQPVDSIFPSRALMPNQALSCFFVLKNVNKSFSSEKKVSSVPVLLGSDLKLGSQSSDEQLFDTANFPLAAFHYSERAYQGTSNQDLNTVDFILITRPLKNTTDPGISESSRLFSHHVCHCSTSSHSPISWLLEGPRSSYHNFSSSFSEINFKMTIYNSSDSIASIRIKTIDSAEGNESAPPSPSSANQTGWHYASLTQDIKVTSDVLGAQMAKSSSLESVSPFIWSGTSSTTLQIEPNSMAEAPLQICIFSPGIYDLSNYILQWKLLPSSRSGNDETSVASGTCQGYPYYLTVLQLQKKFKGLPMNDLFSSRSFSRDSHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELDRLCSKLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLEKNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELTTARVYQKNTRKWTIIGIIILLIIVLIIVLSLRPWKNNNSSSSTTP 1631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1665244 1690322 + CmoCh14G003630.1 Cmo14g00363 395629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00363 1631 Coils Coil 1529 1549 - -
Cmo14g00363 1631 Coils Coil 1451 1475 - -
Cmo14g00363 1631 PANTHER TRANSPORT PROTEIN TRAPP 41 1316 IPR024420 -
Cmo14g00363 1631 SMART tSNARE_6 1521 1588 IPR000727 -
Cmo14g00363 1631 CDD SNARE_syntaxin1-like 1525 1587 - -
Cmo14g00363 1631 Gene3D - 1523 1617 - -
Cmo14g00363 1631 ProSitePatterns Syntaxin / epimorphin family signature. 1532 1571 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo14g00363 1631 Coils Coil 1356 1383 - -
Cmo14g00363 1631 Pfam SNARE domain 1563 1614 IPR000727 -
Cmo14g00363 1631 Gene3D Tetratricopeptide repeat domain 361 588 IPR011990 GO:0005515
Cmo14g00363 1631 SMART SynN_4 1351 1477 IPR006011 GO:0016020
Cmo14g00363 1631 SUPERFAMILY TPR-like 458 583 IPR011990 GO:0005515
Cmo14g00363 1631 Pfam Syntaxin 1358 1561 IPR006011 GO:0016020
Cmo14g00363 1631 CDD SynN 1356 1513 IPR006011 GO:0016020
Cmo14g00363 1631 SUPERFAMILY t-snare proteins 1355 1581 IPR010989 GO:0016020|GO:0016192
Cmo14g00363 1631 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 223 551 IPR024420 -
Cmo14g00363 1631 Gene3D - 1354 1486 - -
Cmo14g00363 1631 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1526 1588 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00530 Cmo-Chr6:2569877 Cmo14g00363 Cmo-Chr14:1665244 9.12E-169 dispersed
Cmo13g00695 Cmo-Chr13:7115501 Cmo14g00363 Cmo-Chr14:1665244 2.14E-109 dispersed
Cmo14g00363 Cmo-Chr14:1665244 Cmo18g00322 Cmo-Chr18:2085688 4.03E-112 dispersed
Cmo14g00363 Cmo-Chr14:1665244 Cmo06g00529 Cmo-Chr6:2549482 0 wgd
Cmo14g00363 Cmo-Chr14:1665244 Cmo07g00850 Cmo-Chr7:4017505 1.23E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00363 K20305 - csv:101219226 2261.49