Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00369 ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCACCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCCACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCGGGGGAACGGCGGGATGCCATCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGCGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTGCGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCCCCGGTGCCGACGCCGCTTTCGACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA 501 55.09 MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1709505 1710005 + CmoCh14G003690.1 Cmo14g00369 395635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00369 166 Pfam Ring finger domain 101 143 IPR001841 -
Cmo14g00369 166 SUPERFAMILY RING/U-box 75 148 - -
Cmo14g00369 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Cmo14g00369 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Cmo14g00369 166 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 9 164 - -
Cmo14g00369 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 164 IPR045899 -
Cmo14g00369 166 SMART ring_2 101 142 IPR001841 -
Cmo14g00369 166 CDD RING-H2_PA-TM-RING 101 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00490 Cmo-Chr5:2312974 Cmo14g00369 Cmo-Chr14:1709505 1.58E-35 dispersed
Cmo06g01078 Cmo-Chr6:8339772 Cmo14g00369 Cmo-Chr14:1709505 1.23E-33 dispersed
Cmo14g00369 Cmo-Chr14:1709505 Cmo14g02129 Cmo-Chr14:15390320 7.37E-27 dispersed
Cmo16g00843 Cmo-Chr16:4449883 Cmo14g00369 Cmo-Chr14:1709505 5.81E-14 transposed
Cmo14g00369 Cmo-Chr14:1709505 Cmo03g01106 Cmo-Chr3:8935077 3.58E-54 wgd
Cmo14g00369 Cmo-Chr14:1709505 Cmo07g00849 Cmo-Chr7:4015530 1.82E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00369 - - mdm:103454174 191.045