Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00412 ATGGAGTTGGGTTTGAGCCTCGGCGATGCACCCATTTCCAATAAGCCATTTGGGTTTCTCTCTAATGGCGTTTCTAAGCTCTCCTCTTCTTCTTCTTCCTCTCTAATGGCTTTAGGGTTTTGTGTCGGTTTGGCTCATGATTCCGCTTCCGGTTCCGGCTCCGGTTCGCCTTCTGGTTCGGTTCACGACGACGACGATGAAGAAGAAGATGATAATCATGATCGGACAATGGTTCTTTCCGGTTCGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTCAGCTCCCGTTCCTCGTTCTTCCCATCTCCGATTTCCATGGCTTTCCGATCACTTAATCCCAGAAGGAGAAGAAAGGGTAGCGCTGGATGTAAACCGCCGCCCTGCGGTGGCGGCTGCGGAGGAGACAGAAGACAGGGCGGCAGTGACGGCGGCGTTGTCATCTCCGAACAGTACGGTTTCGTCTTTCCAGATGGATTTTGGGGTCAGAGCTTCCTCAAGAATCAGCGACGATGAAGAAAATGGGTCTGCAAGAAAAAAGCTTCGACTTTCTAAAGATCAATCGGCTTTTCTTGAAGAAAGCTTCAAAGAACATAGCACTCTCAATCCAAAGCAGAAGCTAGCACTAGCCAAGCAGCTCAACCTCCGACCAAGACAAGTGGAAGTTTGGTTCCAAAATAGAAGAGCTAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAGCTTCAAGAGTTGAGAGCTTTAAAAACATCTCAGCCCTTTTACATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCGTCCTGCGAGCGCGTCGCCACCGCCACTCCCGCTGCCTCCGTTGCCACCAAAACCACCGTCACCGTCGCCACCACCGCCCCCAACCCAGCCGCTCTATGCCTTGCAAACAAGGCGAGGATCTTGCCATTTCCTCATTTGCATCAAGCTGCCTCATAA 1011 50.54 MELGLSLGDAPISNKPFGFLSNGVSKLSSSSSSSLMALGFCVGLAHDSASGSGSGSPSGSVHDDDDEEEDDNHDRTMVLSGSDPPVQLDLLPSAPVPRSSHLRFPWLSDHLIPEGEERVALDVNRRPAVAAAEETEDRAAVTAALSSPNSTVSSFQMDFGVRASSRISDDEENGSARKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATATPAASVATKTTVTVATTAPNPAALCLANKARILPFPHLHQAAS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1958755 1960487 - CmoCh14G004120.1 Cmo14g00412 395678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00412 336 ProSiteProfiles 'Homeobox' domain profile. 173 233 IPR001356 GO:0003677
Cmo14g00412 336 MobiDBLite consensus disorder prediction 48 86 - -
Cmo14g00412 336 CDD homeodomain 177 234 IPR001356 GO:0003677
Cmo14g00412 336 Pfam Homeodomain 177 231 IPR001356 GO:0003677
Cmo14g00412 336 Pfam HD-ZIP protein N terminus 120 155 IPR006712 GO:0005634
Cmo14g00412 336 Coils Coil 239 269 - -
Cmo14g00412 336 ProSitePatterns 'Homeobox' domain signature. 208 231 IPR017970 GO:0000981|GO:0006355
Cmo14g00412 336 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 55 310 - -
Cmo14g00412 336 PANTHER - 55 310 - -
Cmo14g00412 336 SMART HOX_1 175 237 IPR001356 GO:0003677
Cmo14g00412 336 Pfam Homeobox associated leucine zipper 233 267 IPR003106 GO:0006355|GO:0043565
Cmo14g00412 336 SMART halz 233 276 IPR003106 GO:0006355|GO:0043565
Cmo14g00412 336 Gene3D - 181 231 - -
Cmo14g00412 336 SUPERFAMILY Homeodomain-like 156 234 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00102 Cmo14g00412 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00217 Cmo-Chr1:961002 Cmo14g00412 Cmo-Chr14:1958755 1.06E-61 dispersed
Cmo08g00548 Cmo-Chr8:3379157 Cmo14g00412 Cmo-Chr14:1958755 2.27E-98 dispersed
Cmo14g00412 Cmo-Chr14:1958755 Cmo16g01173 Cmo-Chr16:8354962 2.48E-74 dispersed
Cmo14g00412 Cmo-Chr14:1958755 Cmo17g00902 Cmo-Chr17:8159676 5.78E-108 wgd
Cmo14g00412 Cmo-Chr14:1958755 Cmo06g00102 Cmo-Chr6:586773 6.04E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10933 PF00046 Homeodomain 1.20E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00412 K09338 - csv:101222778 367.081