Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00414 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCCATTCCAGAGCCGCTTTCGAACTCGGTTCTTCAAATTGAAGATGTGAATTTAGCTGATTTGACTGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGCGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATACATTGCAGCCATTACAGGCTGGTGAGGGCAGTATCACTGCTGAGGAAAGGAAGAACGAAGCGGGGAAAACATGTGAAATCAACAATGAAGCTCTGGAAGATGAAAAGACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGATTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTGGATTTGGCTAGGGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGTTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTCACTACAAAAAACGTAACTCCGATCTATGGGCGTGGCGGTAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCACGCTCGGAAAGTTGAAAGTTTGCGGCAAACCATCCAGAGGACTGCATTGAGTTTCCCAGTGGAGGATATGATTCGTCGATTGGGAAACAGATTTGATTTTAATCGTGACCATGACCAACCGCCCGAACCAGACAGCTCACACGAAACCTTTGGTAGATCTCCAACCTTGTTGAATAGGCTTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCCCCCCAATGGTGATGTAGGAGATTTAGCACACGCCGATGTGTCTGGCATTGAGACTGGGGAAACCCGTCTTCAGTCTCTCCCCGTGCTTCGATCATTACTCCACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAACTCCGCTGATAGGCTTCCAGATGGTCTTCTATATACCGATCCGCTCATTCCTAGAATTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCATTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCATTTCAACTTCATCCTCCAGTAGGAGAACTGATGCCTTACAGGTTTCTGATGTCGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGACTGGCTTGA 1281 45.67 MGDEIFDAMNLDLNLGPIPEPLSNSVLQIEDVNLADLTEDPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNSGNGNTLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGGNTPVTEEDATLKIPLRPHARKVESLRQTIQRTALSFPVEDMIRRLGNRFDFNRDHDQPPEPDSSHETFGRSPTLLNRLLTSRGIRREQISLPPNGDVGDLAHADVSGIETGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGLLYTDPLIPRIQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSSRRTDALQVSDVDSGNSRAPRRRRLA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1972635 1973915 - CmoCh14G004140.1 Cmo14g00414 395680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00414 426 CDD RING-HC_AtRMA_like 140 184 - -
Cmo14g00414 426 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Cmo14g00414 426 MobiDBLite consensus disorder prediction 248 271 - -
Cmo14g00414 426 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Cmo14g00414 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 197 IPR013083 -
Cmo14g00414 426 SMART ring_2 142 182 IPR001841 -
Cmo14g00414 426 Pfam Zinc finger, C3HC4 type (RING finger) 142 187 - -
Cmo14g00414 426 PANTHER OS01G0830200 PROTEIN 17 409 - -
Cmo14g00414 426 MobiDBLite consensus disorder prediction 395 415 - -
Cmo14g00414 426 MobiDBLite consensus disorder prediction 248 262 - -
Cmo14g00414 426 MobiDBLite consensus disorder prediction 395 426 - -
Cmo14g00414 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 409 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cmo14g00414 426 SUPERFAMILY RING/U-box 138 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00414 Cmo-Chr14:1972635 Cmo12g00442 Cmo-Chr12:2713840 1.37E-27 dispersed
Cmo14g01049 Cmo-Chr14:5756464 Cmo14g00414 Cmo-Chr14:1972635 2.87E-38 transposed
Cmo11g01570 Cmo-Chr11:11296748 Cmo14g00414 Cmo-Chr14:1972635 4.86E-07 transposed
Cmo14g00414 Cmo-Chr14:1972635 Cmo06g00101 Cmo-Chr6:579015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00414 K10666 - csv:101220497 764.222