Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00414 | ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCCATTCCAGAGCCGCTTTCGAACTCGGTTCTTCAAATTGAAGATGTGAATTTAGCTGATTTGACTGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGCGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATACATTGCAGCCATTACAGGCTGGTGAGGGCAGTATCACTGCTGAGGAAAGGAAGAACGAAGCGGGGAAAACATGTGAAATCAACAATGAAGCTCTGGAAGATGAAAAGACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGATTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTGGATTTGGCTAGGGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGTTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTCACTACAAAAAACGTAACTCCGATCTATGGGCGTGGCGGTAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCACGCTCGGAAAGTTGAAAGTTTGCGGCAAACCATCCAGAGGACTGCATTGAGTTTCCCAGTGGAGGATATGATTCGTCGATTGGGAAACAGATTTGATTTTAATCGTGACCATGACCAACCGCCCGAACCAGACAGCTCACACGAAACCTTTGGTAGATCTCCAACCTTGTTGAATAGGCTTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCCCCCCAATGGTGATGTAGGAGATTTAGCACACGCCGATGTGTCTGGCATTGAGACTGGGGAAACCCGTCTTCAGTCTCTCCCCGTGCTTCGATCATTACTCCACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAACTCCGCTGATAGGCTTCCAGATGGTCTTCTATATACCGATCCGCTCATTCCTAGAATTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCATTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCATTTCAACTTCATCCTCCAGTAGGAGAACTGATGCCTTACAGGTTTCTGATGTCGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGACTGGCTTGA | 1281 | 45.67 | MGDEIFDAMNLDLNLGPIPEPLSNSVLQIEDVNLADLTEDPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNSGNGNTLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGGNTPVTEEDATLKIPLRPHARKVESLRQTIQRTALSFPVEDMIRRLGNRFDFNRDHDQPPEPDSSHETFGRSPTLLNRLLTSRGIRREQISLPPNGDVGDLAHADVSGIETGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGLLYTDPLIPRIQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSSRRTDALQVSDVDSGNSRAPRRRRLA | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 1972635 | 1973915 | - | CmoCh14G004140.1 | Cmo14g00414 | 395680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00414 | 426 | CDD | RING-HC_AtRMA_like | 140 | 184 | - | - | |
Cmo14g00414 | 426 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 183 | IPR001841 | - | |
Cmo14g00414 | 426 | MobiDBLite | consensus disorder prediction | 248 | 271 | - | - | |
Cmo14g00414 | 426 | ProSitePatterns | Zinc finger RING-type signature. | 157 | 166 | IPR017907 | - | |
Cmo14g00414 | 426 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 197 | IPR013083 | - | |
Cmo14g00414 | 426 | SMART | ring_2 | 142 | 182 | IPR001841 | - | |
Cmo14g00414 | 426 | Pfam | Zinc finger, C3HC4 type (RING finger) | 142 | 187 | - | - | |
Cmo14g00414 | 426 | PANTHER | OS01G0830200 PROTEIN | 17 | 409 | - | - | |
Cmo14g00414 | 426 | MobiDBLite | consensus disorder prediction | 395 | 415 | - | - | |
Cmo14g00414 | 426 | MobiDBLite | consensus disorder prediction | 248 | 262 | - | - | |
Cmo14g00414 | 426 | MobiDBLite | consensus disorder prediction | 395 | 426 | - | - | |
Cmo14g00414 | 426 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 17 | 409 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cmo14g00414 | 426 | SUPERFAMILY | RING/U-box | 138 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00414 | Cmo-Chr14:1972635 | Cmo12g00442 | Cmo-Chr12:2713840 | 1.37E-27 | dispersed | |
Cmo14g01049 | Cmo-Chr14:5756464 | Cmo14g00414 | Cmo-Chr14:1972635 | 2.87E-38 | transposed | |
Cmo11g01570 | Cmo-Chr11:11296748 | Cmo14g00414 | Cmo-Chr14:1972635 | 4.86E-07 | transposed | |
Cmo14g00414 | Cmo-Chr14:1972635 | Cmo06g00101 | Cmo-Chr6:579015 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00414 | K10666 | - | csv:101220497 | 764.222 |