Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00420 ATGTTTTCGTGGCTGGCAAGGATGGCATCGGCTTGTTGGAAACCAGTGAGACGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGACCTTGAAAATCACTCTTATGGGGATTTTTCTTTCGCTGTGGTTCAGGCGAATGAGGTAATTGAGGATTTTAGTCAGGTTGAGATTGGCCGTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGCGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAAGAACCTAATGAAACTTGCTCAAGAAAGTGGAGACATAACCGGAGATGTTCTTCAAAGGGCATTTTTAGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGATCATGGGGAATAAAACCGACGATTGCAGCAATGGGATCTTGTTGTCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTTGGTAACGTCGGTGATTCCCGGGCTGTTGTTGGCTGTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATTGAGGAGGTTCGACAAGAGCTCAAGACGTTGCATCCCGATGACTCGCATATCGTTGTTATGAAACACGGAGTTTGGCGTATAAAAGGCATAATTCAGGTTTTCAATCATTGTGTGGTATATCAGGTGTCGAGATCGATAGGCGATGCATATTTGAAAAAGCCAGAGTTCTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCAGAGCCTCTCCGACGGCCTGTTCTTACTGCAGAACCATCGTTAAGTACAAGAGTTCTACAACCAAATGACAAATTTCTCATTTTTGCATCCGATGGCCTTTGGGAGCATTTGTCGAATCAACGAGCAGTCGATATTGTGTATAATTACCCAAGAGCAGGAATTGCTAAAAGACTAGTTAAAGCAGCCTTAACTGAGGCTGCGAGGAAGAGGGAGATGAGATACGATGATCTCAAGAAGCTCGAAAAGGGCACACGACGATTCTTTCACGATGATATCACAGTTGTTGTCATCTTTCTGGACCATGAGTTTGAAGGGAAGAAGGCACATGTACCAGAACTATCTGTTCGTGGGTTCACCGATACCGTTGGACCATCAAAATTCTCTGTTCTTCGAGGCGTCGATGAGAATGGTTGA 1188 44.61 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRDLENHSYGDFSFAVVQANEVIEDFSQVEIGRDATFVGVYDGHGGPDASRFICDHLFKNLMKLAQESGDITGDVLQRAFLATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVVGCLGKSNKIVAEQLTRDHNASIEEVRQELKTLHPDDSHIVVMKHGVWRIKGIIQVFNHCVVYQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLSNQRAVDIVYNYPRAGIAKRLVKAALTEAARKREMRYDDLKKLEKGTRRFFHDDITVVVIFLDHEFEGKKAHVPELSVRGFTDTVGPSKFSVLRGVDENG 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1997601 2000012 - CmoCh14G004200.1 Cmo14g00420 395686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00420 395 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Cmo14g00420 395 SMART PP2C_4 43 355 IPR001932 -
Cmo14g00420 395 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Cmo14g00420 395 Gene3D - 29 367 IPR036457 -
Cmo14g00420 395 SUPERFAMILY PP2C-like 53 358 IPR036457 -
Cmo14g00420 395 CDD PP2Cc 47 357 IPR001932 -
Cmo14g00420 395 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 377 - -
Cmo14g00420 395 Pfam Protein phosphatase 2C 72 323 IPR001932 -
Cmo14g00420 395 PANTHER ALPHABET, ISOFORM E-RELATED 6 377 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00094 Cmo14g00420 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00420 Cmo-Chr14:1997601 Cmo20g00737 Cmo-Chr20:3678588 5.56E-148 dispersed
Cmo19g00576 Cmo-Chr19:6559825 Cmo14g00420 Cmo-Chr14:1997601 2.11E-139 dispersed
Cmo14g00420 Cmo-Chr14:1997601 Cmo06g00094 Cmo-Chr6:549666 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00420 K01102 - csv:101222146 699.893