Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00438 ATGGCTTCTTCCAATATTAAGAACCAGGAAGAAGAACAAACTCCTTCATTATTCAGCTTCCAAAACAACAATTTTGCTGATCAATTACCCTTCTCCATGAATCTCCCTTCCATTTCTTCAAATTTCATAACTAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCAAGCCCTTTTTCTGTATCTGGATGGACAAGAACCCTCTTCAACCACTACTACTCATCACCAATCACAGAGTTCGAGCATGAGACCGCCGATGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTGCCGATAAAAGGAAGCACAGCAATGATTAACCATGGTGATTCAAAGATCAAACCATCAGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCAATGGAGCCACCGTATCCGGACCAACCCTAACCCAAACCACGACAAACGAACCTCATCCCAAACCTCCAAAACGTGAAGCCAACAAGAAAGGGCTGACCTCAAGCTCAGACCAAGAAGCCCCCAAAACTCCAGACCCCAAGACCCTTAGAAGACTGGCTCAGAATCGAGAGGCTGCTAGAAAAAGCAGGCTGAGAAAAAAGGCGTATGTTCAGCAGCTAGAATTGAGTAGGATTAAGCTCACGCAGCTGGAACAAGAGCTACAAAGAGCAAGAACTCAGGGTATGTTTCTCGGAGGTGGCGGTGGCGGTGGCGGCGCTGCCGTTTTAGGACCTGACCAAGGACTTCCCGTCGGCCTCCATAACCTCACCACCGAAGCAGCGGTGTTTGACATCGAATACGGGCGGTGGCAAGAGGAGCACCACCGATTGATGTGCGAGCTCCAAGCAGCGGTGCAAGAACATTTACGGGAAAACGAACTGCGGTTGTTCGTCGATAGTTGTCTGGCTCATTACGACGAGGTTCTAAACTTGAAGATGATGGTTGCTAGGTCCGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCATGTGGATCGGCGACTTTAGGCCCTCCGAGCTTATTAAGATAATAATGGGTCAAGTAGAGCCATTAACAGAGCATCAACTAATGAACATTTGTGGACTGCAACAATCAACACAAGAGAGTGAGGAAGCATTGTCTCAAGGGCTTGAAGCCCTAAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTACCCCTCCCAATATGGCTAACTATATGGGGCAGATGACCTTAGCCATCAACAAGCTCTCCTCTCTTGAAGCCTTTGTAAGACAGGCGGATAATTTGAGGCACCAAACGCTTCACCGGTTGCATCAAATGTTGACGACTCGTCAAGCCGCAAGGTGTTTGCTAGCCATTGCAGAGTATTTCCATCGTCTTCGAGCTCTTAGTTCCTTGTGGTTGGCTCGTCCAAGGCAAGATTAA 1428 48.6 MASSNIKNQEEEQTPSLFSFQNNNFADQLPFSMNLPSISSNFITKDGGGDDLGELDQALFLYLDGQEPSSTTTTHHQSQSSSMRPPMLNIFPSQPMHVDPLPIKGSTAMINHGDSKIKPSEPSKELANQRSNGATVSGPTLTQTTTNEPHPKPPKREANKKGLTSSSDQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGGGGGGAAVLGPDQGLPVGLHNLTTEAAVFDIEYGRWQEEHHRLMCELQAAVQEHLRENELRLFVDSCLAHYDEVLNLKMMVARSDVFHLVSGMWKTPAERCFMWIGDFRPSELIKIIMGQVEPLTEHQLMNICGLQQSTQESEEALSQGLEALNQSLSDTITSDSLSTPPNMANYMGQMTLAINKLSSLEAFVRQADNLRHQTLHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2091037 2095610 + CmoCh14G004380.1 Cmo14g00438 395704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00438 475 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 63 474 - -
Cmo14g00438 475 MobiDBLite consensus disorder prediction 1 20 - -
Cmo14g00438 475 PANTHER TRANSCRIPTION FACTOR TGA9 63 474 - -
Cmo14g00438 475 Coils Coil 197 224 - -
Cmo14g00438 475 Gene3D - 177 227 - -
Cmo14g00438 475 SMART brlzneu 174 259 IPR004827 GO:0003700|GO:0006355
Cmo14g00438 475 Pfam Seed dormancy control 275 349 IPR025422 GO:0006351|GO:0043565
Cmo14g00438 475 CDD bZIP_HBP1b-like 178 228 - -
Cmo14g00438 475 MobiDBLite consensus disorder prediction 97 181 - -
Cmo14g00438 475 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Cmo14g00438 475 MobiDBLite consensus disorder prediction 67 86 - -
Cmo14g00438 475 MobiDBLite consensus disorder prediction 124 149 - -
Cmo14g00438 475 SUPERFAMILY Leucine zipper domain 178 220 IPR046347 GO:0003700|GO:0006355
Cmo14g00438 475 Pfam bZIP transcription factor 178 214 IPR004827 GO:0003700|GO:0006355
Cmo14g00438 475 ProSiteProfiles DOG1 domain profile. 257 471 IPR025422 GO:0006351|GO:0043565
Cmo14g00438 475 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00438 Cmo-Chr14:2091037 Cmo15g00946 Cmo-Chr15:4867276 1.23E-122 dispersed
Cmo14g00438 Cmo-Chr14:2091037 Cmo06g00079 Cmo-Chr6:475401 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10936 PF14144 DOG1 2.90E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00438 K14431 - csv:101204923 766.533