Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00438 | ATGGCTTCTTCCAATATTAAGAACCAGGAAGAAGAACAAACTCCTTCATTATTCAGCTTCCAAAACAACAATTTTGCTGATCAATTACCCTTCTCCATGAATCTCCCTTCCATTTCTTCAAATTTCATAACTAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCAAGCCCTTTTTCTGTATCTGGATGGACAAGAACCCTCTTCAACCACTACTACTCATCACCAATCACAGAGTTCGAGCATGAGACCGCCGATGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTGCCGATAAAAGGAAGCACAGCAATGATTAACCATGGTGATTCAAAGATCAAACCATCAGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCAATGGAGCCACCGTATCCGGACCAACCCTAACCCAAACCACGACAAACGAACCTCATCCCAAACCTCCAAAACGTGAAGCCAACAAGAAAGGGCTGACCTCAAGCTCAGACCAAGAAGCCCCCAAAACTCCAGACCCCAAGACCCTTAGAAGACTGGCTCAGAATCGAGAGGCTGCTAGAAAAAGCAGGCTGAGAAAAAAGGCGTATGTTCAGCAGCTAGAATTGAGTAGGATTAAGCTCACGCAGCTGGAACAAGAGCTACAAAGAGCAAGAACTCAGGGTATGTTTCTCGGAGGTGGCGGTGGCGGTGGCGGCGCTGCCGTTTTAGGACCTGACCAAGGACTTCCCGTCGGCCTCCATAACCTCACCACCGAAGCAGCGGTGTTTGACATCGAATACGGGCGGTGGCAAGAGGAGCACCACCGATTGATGTGCGAGCTCCAAGCAGCGGTGCAAGAACATTTACGGGAAAACGAACTGCGGTTGTTCGTCGATAGTTGTCTGGCTCATTACGACGAGGTTCTAAACTTGAAGATGATGGTTGCTAGGTCCGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCATGTGGATCGGCGACTTTAGGCCCTCCGAGCTTATTAAGATAATAATGGGTCAAGTAGAGCCATTAACAGAGCATCAACTAATGAACATTTGTGGACTGCAACAATCAACACAAGAGAGTGAGGAAGCATTGTCTCAAGGGCTTGAAGCCCTAAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTACCCCTCCCAATATGGCTAACTATATGGGGCAGATGACCTTAGCCATCAACAAGCTCTCCTCTCTTGAAGCCTTTGTAAGACAGGCGGATAATTTGAGGCACCAAACGCTTCACCGGTTGCATCAAATGTTGACGACTCGTCAAGCCGCAAGGTGTTTGCTAGCCATTGCAGAGTATTTCCATCGTCTTCGAGCTCTTAGTTCCTTGTGGTTGGCTCGTCCAAGGCAAGATTAA | 1428 | 48.6 | MASSNIKNQEEEQTPSLFSFQNNNFADQLPFSMNLPSISSNFITKDGGGDDLGELDQALFLYLDGQEPSSTTTTHHQSQSSSMRPPMLNIFPSQPMHVDPLPIKGSTAMINHGDSKIKPSEPSKELANQRSNGATVSGPTLTQTTTNEPHPKPPKREANKKGLTSSSDQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGGGGGGAAVLGPDQGLPVGLHNLTTEAAVFDIEYGRWQEEHHRLMCELQAAVQEHLRENELRLFVDSCLAHYDEVLNLKMMVARSDVFHLVSGMWKTPAERCFMWIGDFRPSELIKIIMGQVEPLTEHQLMNICGLQQSTQESEEALSQGLEALNQSLSDTITSDSLSTPPNMANYMGQMTLAINKLSSLEAFVRQADNLRHQTLHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2091037 | 2095610 | + | CmoCh14G004380.1 | Cmo14g00438 | 395704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00438 | 475 | PANTHER | BZIP TRANSCRIPTION FACTOR TGA10 | 63 | 474 | - | - | |
Cmo14g00438 | 475 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo14g00438 | 475 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 63 | 474 | - | - | |
Cmo14g00438 | 475 | Coils | Coil | 197 | 224 | - | - | |
Cmo14g00438 | 475 | Gene3D | - | 177 | 227 | - | - | |
Cmo14g00438 | 475 | SMART | brlzneu | 174 | 259 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo14g00438 | 475 | Pfam | Seed dormancy control | 275 | 349 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo14g00438 | 475 | CDD | bZIP_HBP1b-like | 178 | 228 | - | - | |
Cmo14g00438 | 475 | MobiDBLite | consensus disorder prediction | 97 | 181 | - | - | |
Cmo14g00438 | 475 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 176 | 220 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo14g00438 | 475 | MobiDBLite | consensus disorder prediction | 67 | 86 | - | - | |
Cmo14g00438 | 475 | MobiDBLite | consensus disorder prediction | 124 | 149 | - | - | |
Cmo14g00438 | 475 | SUPERFAMILY | Leucine zipper domain | 178 | 220 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo14g00438 | 475 | Pfam | bZIP transcription factor | 178 | 214 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo14g00438 | 475 | ProSiteProfiles | DOG1 domain profile. | 257 | 471 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo14g00438 | 475 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 181 | 196 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00438 | Cmo-Chr14:2091037 | Cmo15g00946 | Cmo-Chr15:4867276 | 1.23E-122 | dispersed | |
Cmo14g00438 | Cmo-Chr14:2091037 | Cmo06g00079 | Cmo-Chr6:475401 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10936 | PF14144 | DOG1 | 2.90E-30 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00438 | K14431 | - | csv:101204923 | 766.533 |