Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00443 | ATGGAGATTAGAGTGGGGACTGTTGGTGGATCCAGTCCAATCGGGCGTCAATCGGATGATTCTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTTACGGCACTTCTGGAGCTTCCGGCGACGCAGGCTTTAGAGCTTCTCCACTCACCGGATTCCGCCGGTGGTGCGACGGCGGCGGTTGTGACGGATGATTCCGTTCCGAAACCCTACTTCGGTGCCTTCAATTGCAATTTGACGTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAATTCTCTGTCTTAGCCGAAGAGCATTCGCCGGATACGACAAGTAAAGTGGCGTTGAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCGTTGCAGACATTAATCTCCGATCCGGCGGTGGAGAACACGAACCAGAGATCGACGAAGAGGAAGGAGCGCGAGAAAAAGGGAAGAGGGTCAACGAAGAAGAGCAAGAACGAAAGCAGCGAGGCGGCTGAAAAGCTTCCTTACATCCATGTCCGAGCTCGCCGTGGTCAAGCGACGGACAGCCATAGCCTAGCAGAGCGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTTCTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCCTTAGTGTTGGATGAAATCATCAACCATGTTCAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCGATACTGGAAAGCAACTTTCCGAGCATGGTTGCGCCATTGATGTGGCCAGAAATCCCAGTAAATGGAACCAGACAACAATATCAACAACAATGGCATTTCGATGCTGCAGTTAACCAGCGAGCGTGGACGATGGATGAACATAATCATCATAATTTCAGCACCCCCGAAAACTCTCTTTTAAGTTACGACTCTTCAGCGAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA | 1086 | 49.63 | MEIRVGTVGGSSPIGRQSDDSGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSAGGATAAVVTDDSVPKPYFGAFNCNLTFPTNSALIERAAKFSVLAEEHSPDTTSKVALNLEKVKNEPTTETDSNPNPLQTLISDPAVENTNQRSTKRKEREKKGRGSTKKSKNESSEAAEKLPYIHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPILESNFPSMVAPLMWPEIPVNGTRQQYQQQWHFDAAVNQRAWTMDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2113462 | 2117515 | + | CmoCh14G004430.1 | Cmo14g00443 | 395709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00443 | 361 | CDD | bHLH_AtBPE_like | 189 | 274 | - | - | |
Cmo14g00443 | 361 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo14g00443 | 361 | Pfam | Helix-loop-helix DNA-binding domain | 203 | 250 | IPR011598 | GO:0046983 | |
Cmo14g00443 | 361 | Coils | Coil | 239 | 259 | - | - | |
Cmo14g00443 | 361 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 199 | 249 | IPR011598 | GO:0046983 | |
Cmo14g00443 | 361 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 20 | 360 | IPR024097 | GO:0006355 | |
Cmo14g00443 | 361 | MobiDBLite | consensus disorder prediction | 131 | 189 | - | - | |
Cmo14g00443 | 361 | MobiDBLite | consensus disorder prediction | 135 | 156 | - | - | |
Cmo14g00443 | 361 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 197 | 268 | IPR036638 | GO:0046983 | |
Cmo14g00443 | 361 | MobiDBLite | consensus disorder prediction | 172 | 189 | - | - | |
Cmo14g00443 | 361 | PANTHER | TRANSCRIPTION FACTOR BHLH60 | 20 | 360 | - | - | |
Cmo14g00443 | 361 | SMART | finulus | 205 | 255 | IPR011598 | GO:0046983 | |
Cmo14g00443 | 361 | Gene3D | - | 196 | 269 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00075 | Cmo14g00443 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00443 | Cmo-Chr14:2113462 | Cmo11g01117 | Cmo-Chr11:6266486 | 4.35E-45 | dispersed | |
Cmo14g00443 | Cmo-Chr14:2113462 | Cmo06g00075 | Cmo-Chr6:459745 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10938 | PF00010 | HLH | 1.40E-05 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00443 | - | - | csv:101205014 | 622.854 |