Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00443 ATGGAGATTAGAGTGGGGACTGTTGGTGGATCCAGTCCAATCGGGCGTCAATCGGATGATTCTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTTACGGCACTTCTGGAGCTTCCGGCGACGCAGGCTTTAGAGCTTCTCCACTCACCGGATTCCGCCGGTGGTGCGACGGCGGCGGTTGTGACGGATGATTCCGTTCCGAAACCCTACTTCGGTGCCTTCAATTGCAATTTGACGTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAATTCTCTGTCTTAGCCGAAGAGCATTCGCCGGATACGACAAGTAAAGTGGCGTTGAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCGTTGCAGACATTAATCTCCGATCCGGCGGTGGAGAACACGAACCAGAGATCGACGAAGAGGAAGGAGCGCGAGAAAAAGGGAAGAGGGTCAACGAAGAAGAGCAAGAACGAAAGCAGCGAGGCGGCTGAAAAGCTTCCTTACATCCATGTCCGAGCTCGCCGTGGTCAAGCGACGGACAGCCATAGCCTAGCAGAGCGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTTCTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCCTTAGTGTTGGATGAAATCATCAACCATGTTCAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCGATACTGGAAAGCAACTTTCCGAGCATGGTTGCGCCATTGATGTGGCCAGAAATCCCAGTAAATGGAACCAGACAACAATATCAACAACAATGGCATTTCGATGCTGCAGTTAACCAGCGAGCGTGGACGATGGATGAACATAATCATCATAATTTCAGCACCCCCGAAAACTCTCTTTTAAGTTACGACTCTTCAGCGAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1086 49.63 MEIRVGTVGGSSPIGRQSDDSGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSAGGATAAVVTDDSVPKPYFGAFNCNLTFPTNSALIERAAKFSVLAEEHSPDTTSKVALNLEKVKNEPTTETDSNPNPLQTLISDPAVENTNQRSTKRKEREKKGRGSTKKSKNESSEAAEKLPYIHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPILESNFPSMVAPLMWPEIPVNGTRQQYQQQWHFDAAVNQRAWTMDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2113462 2117515 + CmoCh14G004430.1 Cmo14g00443 395709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00443 361 CDD bHLH_AtBPE_like 189 274 - -
Cmo14g00443 361 MobiDBLite consensus disorder prediction 1 20 - -
Cmo14g00443 361 Pfam Helix-loop-helix DNA-binding domain 203 250 IPR011598 GO:0046983
Cmo14g00443 361 Coils Coil 239 259 - -
Cmo14g00443 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 249 IPR011598 GO:0046983
Cmo14g00443 361 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 360 IPR024097 GO:0006355
Cmo14g00443 361 MobiDBLite consensus disorder prediction 131 189 - -
Cmo14g00443 361 MobiDBLite consensus disorder prediction 135 156 - -
Cmo14g00443 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 268 IPR036638 GO:0046983
Cmo14g00443 361 MobiDBLite consensus disorder prediction 172 189 - -
Cmo14g00443 361 PANTHER TRANSCRIPTION FACTOR BHLH60 20 360 - -
Cmo14g00443 361 SMART finulus 205 255 IPR011598 GO:0046983
Cmo14g00443 361 Gene3D - 196 269 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00075 Cmo14g00443 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00443 Cmo-Chr14:2113462 Cmo11g01117 Cmo-Chr11:6266486 4.35E-45 dispersed
Cmo14g00443 Cmo-Chr14:2113462 Cmo06g00075 Cmo-Chr6:459745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10938 PF00010 HLH 1.40E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00443 - - csv:101205014 622.854