Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00447 | ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACCCTTCTCCACCAAACCCTCATCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCCCCACGCGCCGCCGTCCTCTCCTCCTCTCCGTCAAGCTCTCCCTCTCCTCCGCCTCAGCCCCACCAGATCATCCCAAAACAACAACCCCCAACAAAATTTTTCCTCCTCTTCCTCCTCCTCCTCTGCCACCGCGGCCGCCAACGTTTCGGTGACTGTTGCACTCCACATAGGGTTACCAAGCCCTAGCGCCTCAGAAATGGCAACCCTTTTGCTGTCTAGTAATCAAAATCAAGAGGAAGAAGACGAGGACGAAGACGACGAAGAACACGAAGAACACGAATTAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACGCCATCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATTGTCATCATCGTCATCACAGGTTCGATGAAGAGGAGGACCCAGCTTATTCGGAAGTCGAACAAGATCATGATTGA | 1062 | 48.78 | MDDPSTNFFTNLFKFNPSPPNPHPPPPPPPPYFLPTHPHAPPSSPPLRQALPLLRLSPTRSSQNNNPQQNFSSSSSSSSATAAANVSVTVALHIGLPSPSASEMATLLLSSNQNQEEEDEDEDDEEHEEHELEEEEEEEVAAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSNANNNPDHRHRHHHHCHHRHHRFDEEEDPAYSEVEQDHD | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2135405 | 2137717 | - | CmoCh14G004470.1 | Cmo14g00447 | 395713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 114 | 141 | - | - | |
Cmo14g00447 | 353 | SUPERFAMILY | beta-beta-alpha zinc fingers | 239 | 277 | IPR036236 | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 334 | 353 | - | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 55 | 78 | - | - | |
Cmo14g00447 | 353 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 173 | 200 | IPR013087 | - | |
Cmo14g00447 | 353 | Coils | Coil | 115 | 138 | - | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Cmo14g00447 | 353 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 338 | - | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 310 | 353 | - | - | |
Cmo14g00447 | 353 | Gene3D | Classic Zinc Finger | 172 | 195 | - | - | |
Cmo14g00447 | 353 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 338 | IPR043584 | GO:0003700|GO:0010468 | |
Cmo14g00447 | 353 | Gene3D | Classic Zinc Finger | 234 | 316 | - | - | |
Cmo14g00447 | 353 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 257 | 277 | IPR013087 | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 110 | 141 | - | - | |
Cmo14g00447 | 353 | SMART | c2h2final6 | 173 | 195 | IPR013087 | - | |
Cmo14g00447 | 353 | SMART | c2h2final6 | 257 | 277 | IPR013087 | - | |
Cmo14g00447 | 353 | MobiDBLite | consensus disorder prediction | 17 | 48 | - | - | |
Cmo14g00447 | 353 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 175 | 195 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00072 | Cmo14g00447 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00447 | Cmo-Chr14:2135405 | Cmo20g00081 | Cmo-Chr20:418949 | 2.90E-125 | dispersed | |
Cmo14g00447 | Cmo-Chr14:2135405 | Cmo17g00925 | Cmo-Chr17:8249266 | 3.15E-105 | wgd | |
Cmo14g00447 | Cmo-Chr14:2135405 | Cmo06g00072 | Cmo-Chr6:444773 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10939 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00447 | - | - | csv:101208110 | 434.106 |