Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00447 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACCCTTCTCCACCAAACCCTCATCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCCCCACGCGCCGCCGTCCTCTCCTCCTCTCCGTCAAGCTCTCCCTCTCCTCCGCCTCAGCCCCACCAGATCATCCCAAAACAACAACCCCCAACAAAATTTTTCCTCCTCTTCCTCCTCCTCCTCTGCCACCGCGGCCGCCAACGTTTCGGTGACTGTTGCACTCCACATAGGGTTACCAAGCCCTAGCGCCTCAGAAATGGCAACCCTTTTGCTGTCTAGTAATCAAAATCAAGAGGAAGAAGACGAGGACGAAGACGACGAAGAACACGAAGAACACGAATTAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACGCCATCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTAAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTCAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTACAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATTGTCATCATCGTCATCACAGGTTCGATGAAGAGGAGGACCCAGCTTATTCGGAAGTCGAACAAGATCATGATTGA 1062 48.78 MDDPSTNFFTNLFKFNPSPPNPHPPPPPPPPYFLPTHPHAPPSSPPLRQALPLLRLSPTRSSQNNNPQQNFSSSSSSSSATAAANVSVTVALHIGLPSPSASEMATLLLSSNQNQEEEDEDEDDEEHEEHELEEEEEEEVAAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSNANNNPDHRHRHHHHCHHRHHRFDEEEDPAYSEVEQDHD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2135405 2137717 - CmoCh14G004470.1 Cmo14g00447 395713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00447 353 MobiDBLite consensus disorder prediction 114 141 - -
Cmo14g00447 353 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 334 353 - -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 55 78 - -
Cmo14g00447 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Cmo14g00447 353 Coils Coil 115 138 - -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 1 16 - -
Cmo14g00447 353 PANTHER ZINC FINGER PROTEIN WIP2 1 338 - -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 310 353 - -
Cmo14g00447 353 Gene3D Classic Zinc Finger 172 195 - -
Cmo14g00447 353 PANTHER ZINC FINGER PROTEIN WIP2 1 338 IPR043584 GO:0003700|GO:0010468
Cmo14g00447 353 Gene3D Classic Zinc Finger 234 316 - -
Cmo14g00447 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 277 IPR013087 -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 1 78 - -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 110 141 - -
Cmo14g00447 353 SMART c2h2final6 173 195 IPR013087 -
Cmo14g00447 353 SMART c2h2final6 257 277 IPR013087 -
Cmo14g00447 353 MobiDBLite consensus disorder prediction 17 48 - -
Cmo14g00447 353 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00072 Cmo14g00447 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00447 Cmo-Chr14:2135405 Cmo20g00081 Cmo-Chr20:418949 2.90E-125 dispersed
Cmo14g00447 Cmo-Chr14:2135405 Cmo17g00925 Cmo-Chr17:8249266 3.15E-105 wgd
Cmo14g00447 Cmo-Chr14:2135405 Cmo06g00072 Cmo-Chr6:444773 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10939 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00447 - - csv:101208110 434.106