Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00457 | ATGAATAGCTTGACTGTTGAAACGGAAGATGCCTTTTCGAGCTTGCTCGAGCTTGCTGCGAATGATGATGTTGATGCCTTCAAGAGATCGATTGAGCGTGATCTTTCTGGCATTGATGAGATTGGTTTCTGGTATGGTCGATTACGAGGCTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACGTATGGTAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTGAATCGCGCTGTTGGACTTGATAGAAGCACTGCCCTTCACTGTGCAGCCTCCGGTGGGGCTGCAAATGCTGTAGATGTAGTGAAGCTACTCTTAGCTGCTGGTGCTGATCCTAATATGGTCGATGGGAATGGACATCGACCGGTTGATGTGGTTGTTGCCCCGCTAAGGCACGCTGAGCTTAAATCAACCCTTACCGAACTTCTTAAGACAAATGGTTTCTCTGGTGATGGAAATCTTGATGCTTTAACAGGTGCTAGAAATTCTCTTTCTCCTCGCCCTTCGTCTCCTCTGAATGCTCCATCGTTCACATCGGAGTTAGTTTCATCTCCAACAAAGTCGAAACTAAGTGATTTTTCAATGTATCCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGATATCAAGAACAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCCTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCTAGGAGGAGGGATCCTAGAAAGTTCCATTATAGCTGTGTAACCTGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGTTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACGAATTGCTCAAGGAGAGTTTGCTTCTTTGCACACACCACTGAGGAACTGCGACCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCGCATCCGTCCGTGGCTTGGCCCCAACCAAATGTACCTGCCTTGCTTCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCCTTGAGTGCAAGAGATATTCCTGTCGAGGACTTCGATTATCTGAGTGATTTTGAACTGCAGCAGCAGCAGCAGCAGCTCGTTAATGACTTGAATTGTCTTTCTCAACCACCATTAAGTTCAAATTCGCTGAGCCGTTCTGGTCGACTGAAAACTATGACCCCTTCAAATCTTGACGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCATCCTCTATTGCAAGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCCCCATCTCTCCAGTGGGCTCACGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAACTCGGTGCCAATTCTGCTTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCTAAATGGGGACCTTCTAATGGAAGGCCTGACTGGGCAGTCAATGCGGATGAAATGGGTAAACTTCGACGTTCATCATCATTTGAGCTCGGGAACAACGGCGAAGAGCCAGATTTATCATGGGTTCAATCACTAGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCAAATTTGGGTGGCGATAGTTTCGTATCTTCTGGTGAGAGTTCTAACGTGAACTCGCAAATGGAGTCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCGCTACAGAACTAA | 2121 | 46.72 | MNSLTVETEDAFSSLLELAANDDVDAFKRSIERDLSGIDEIGFWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDVVKLLLAAGADPNMVDGNGHRPVDVVVAPLRHAELKSTLTELLKTNGFSGDGNLDALTGARNSLSPRPSSPLNAPSFTSELVSSPTKSKLSDFSMYPASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVTCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHPSVAWPQPNVPALLLPGSNIQSSRLRSSLSARDIPVEDFDYLSDFELQQQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPPISPVGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPASSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNVNSQMESVDHAALGAWLEQMQLDHLVALQN | 706 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2196576 | 2198696 | - | CmoCh14G004570.1 | Cmo14g00457 | 395723 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00457 | 706 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 277 | 297 | IPR000571 | GO:0046872 | |
Cmo14g00457 | 706 | MobiDBLite | consensus disorder prediction | 651 | 682 | - | - | |
Cmo14g00457 | 706 | MobiDBLite | consensus disorder prediction | 576 | 607 | - | - | |
Cmo14g00457 | 706 | Gene3D | - | 272 | 335 | - | - | |
Cmo14g00457 | 706 | ProSiteProfiles | Ankyrin repeat region circular profile. | 92 | 126 | - | - | |
Cmo14g00457 | 706 | ProSiteProfiles | Ankyrin repeat profile. | 92 | 127 | IPR002110 | GO:0005515 | |
Cmo14g00457 | 706 | SUPERFAMILY | Ankyrin repeat | 7 | 137 | IPR036770 | - | |
Cmo14g00457 | 706 | MobiDBLite | consensus disorder prediction | 664 | 682 | - | - | |
Cmo14g00457 | 706 | MobiDBLite | consensus disorder prediction | 576 | 606 | - | - | |
Cmo14g00457 | 706 | Pfam | Ankyrin repeats (3 copies) | 55 | 126 | IPR002110 | GO:0005515 | |
Cmo14g00457 | 706 | Gene3D | - | 8 | 156 | IPR036770 | - | |
Cmo14g00457 | 706 | PRINTS | Ankyrin repeat signature | 58 | 73 | IPR002110 | GO:0005515 | |
Cmo14g00457 | 706 | PRINTS | Ankyrin repeat signature | 111 | 125 | IPR002110 | GO:0005515 | |
Cmo14g00457 | 706 | SMART | ANK_2a | 92 | 124 | IPR002110 | GO:0005515 | |
Cmo14g00457 | 706 | SMART | ANK_2a | 57 | 87 | IPR002110 | GO:0005515 | |
Cmo14g00457 | 706 | PANTHER | ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN | 1 | 703 | - | - | |
Cmo14g00457 | 706 | MobiDBLite | consensus disorder prediction | 171 | 193 | - | - | |
Cmo14g00457 | 706 | ProSiteProfiles | Zinc finger C3H1-type profile. | 277 | 299 | IPR000571 | GO:0046872 | |
Cmo14g00457 | 706 | PANTHER | UNKEMPT FAMILY MEMBER | 1 | 703 | IPR045234 | - | |
Cmo14g00457 | 706 | SMART | c3hfinal6 | 272 | 298 | IPR000571 | GO:0046872 | |
Cmo14g00457 | 706 | SMART | c3hfinal6 | 307 | 330 | IPR000571 | GO:0046872 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00067 | Cmo14g00457 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00238 | Cmo-Chr1:1076502 | Cmo14g00457 | Cmo-Chr14:2196576 | 0 | dispersed | |
Cmo14g00457 | Cmo-Chr14:2196576 | Cmo14g01019 | Cmo-Chr14:5542971 | 0 | dispersed | |
Cmo19g01036 | Cmo-Chr19:9049904 | Cmo14g00457 | Cmo-Chr14:2196576 | 1.29E-58 | dispersed | |
Cmo14g00457 | Cmo-Chr14:2196576 | Cmo06g00067 | Cmo-Chr6:411596 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10942 | PF12796 | Ank_2 | 7.50E-10 | CL0465 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00457 | - | - | csv:101207646 | 1251.5 |