Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00457 ATGAATAGCTTGACTGTTGAAACGGAAGATGCCTTTTCGAGCTTGCTCGAGCTTGCTGCGAATGATGATGTTGATGCCTTCAAGAGATCGATTGAGCGTGATCTTTCTGGCATTGATGAGATTGGTTTCTGGTATGGTCGATTACGAGGCTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACGTATGGTAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTGAATCGCGCTGTTGGACTTGATAGAAGCACTGCCCTTCACTGTGCAGCCTCCGGTGGGGCTGCAAATGCTGTAGATGTAGTGAAGCTACTCTTAGCTGCTGGTGCTGATCCTAATATGGTCGATGGGAATGGACATCGACCGGTTGATGTGGTTGTTGCCCCGCTAAGGCACGCTGAGCTTAAATCAACCCTTACCGAACTTCTTAAGACAAATGGTTTCTCTGGTGATGGAAATCTTGATGCTTTAACAGGTGCTAGAAATTCTCTTTCTCCTCGCCCTTCGTCTCCTCTGAATGCTCCATCGTTCACATCGGAGTTAGTTTCATCTCCAACAAAGTCGAAACTAAGTGATTTTTCAATGTATCCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGATATCAAGAACAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCCTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCTAGGAGGAGGGATCCTAGAAAGTTCCATTATAGCTGTGTAACCTGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGTTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACGAATTGCTCAAGGAGAGTTTGCTTCTTTGCACACACCACTGAGGAACTGCGACCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCGCATCCGTCCGTGGCTTGGCCCCAACCAAATGTACCTGCCTTGCTTCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCCTTGAGTGCAAGAGATATTCCTGTCGAGGACTTCGATTATCTGAGTGATTTTGAACTGCAGCAGCAGCAGCAGCAGCTCGTTAATGACTTGAATTGTCTTTCTCAACCACCATTAAGTTCAAATTCGCTGAGCCGTTCTGGTCGACTGAAAACTATGACCCCTTCAAATCTTGACGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCATCCTCTATTGCAAGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCCCCATCTCTCCAGTGGGCTCACGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAACTCGGTGCCAATTCTGCTTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCTAAATGGGGACCTTCTAATGGAAGGCCTGACTGGGCAGTCAATGCGGATGAAATGGGTAAACTTCGACGTTCATCATCATTTGAGCTCGGGAACAACGGCGAAGAGCCAGATTTATCATGGGTTCAATCACTAGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCAAATTTGGGTGGCGATAGTTTCGTATCTTCTGGTGAGAGTTCTAACGTGAACTCGCAAATGGAGTCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCGCTACAGAACTAA 2121 46.72 MNSLTVETEDAFSSLLELAANDDVDAFKRSIERDLSGIDEIGFWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDVVKLLLAAGADPNMVDGNGHRPVDVVVAPLRHAELKSTLTELLKTNGFSGDGNLDALTGARNSLSPRPSSPLNAPSFTSELVSSPTKSKLSDFSMYPASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVTCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHPSVAWPQPNVPALLLPGSNIQSSRLRSSLSARDIPVEDFDYLSDFELQQQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPPISPVGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPASSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNVNSQMESVDHAALGAWLEQMQLDHLVALQN 706
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 2196576 2198696 - CmoCh14G004570.1 Cmo14g00457 395723
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00457 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Cmo14g00457 706 MobiDBLite consensus disorder prediction 651 682 - -
Cmo14g00457 706 MobiDBLite consensus disorder prediction 576 607 - -
Cmo14g00457 706 Gene3D - 272 335 - -
Cmo14g00457 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cmo14g00457 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Cmo14g00457 706 SUPERFAMILY Ankyrin repeat 7 137 IPR036770 -
Cmo14g00457 706 MobiDBLite consensus disorder prediction 664 682 - -
Cmo14g00457 706 MobiDBLite consensus disorder prediction 576 606 - -
Cmo14g00457 706 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
Cmo14g00457 706 Gene3D - 8 156 IPR036770 -
Cmo14g00457 706 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Cmo14g00457 706 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Cmo14g00457 706 SMART ANK_2a 92 124 IPR002110 GO:0005515
Cmo14g00457 706 SMART ANK_2a 57 87 IPR002110 GO:0005515
Cmo14g00457 706 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 703 - -
Cmo14g00457 706 MobiDBLite consensus disorder prediction 171 193 - -
Cmo14g00457 706 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Cmo14g00457 706 PANTHER UNKEMPT FAMILY MEMBER 1 703 IPR045234 -
Cmo14g00457 706 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Cmo14g00457 706 SMART c3hfinal6 307 330 IPR000571 GO:0046872
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo06g00067 Cmo14g00457 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00238 Cmo-Chr1:1076502 Cmo14g00457 Cmo-Chr14:2196576 0 dispersed
Cmo14g00457 Cmo-Chr14:2196576 Cmo14g01019 Cmo-Chr14:5542971 0 dispersed
Cmo19g01036 Cmo-Chr19:9049904 Cmo14g00457 Cmo-Chr14:2196576 1.29E-58 dispersed
Cmo14g00457 Cmo-Chr14:2196576 Cmo06g00067 Cmo-Chr6:411596 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10942 PF12796 Ank_2 7.50E-10 CL0465 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00457 - - csv:101207646 1251.5