Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00462 | ATGGAAAATCACGGCGATGATCCAAATAGCTCCGAGAGGGCGGAGCCGGTGAGGTCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTCTTGAATCTATTTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAGACGGTCAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTTGGCGACGCCAATGTTTTCTACTGGTTTCAGAATCGCCGCTCCCGGTCTCGCCGCCGCCAGCGTCAGCTTCAGGCTGCCGCTACTCATCAAGCTACCGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTGGCGATAACGGCGGTCGCTACAATAGTGGTGTTATGAATTTTGCTGGTTCCTCCTCTTACTTCGGAGGTGGGTCGTCGTCGTCGTCGTCCTCTGCTTCTGGTGGCGGTGGCGGCGGTGGTAGTAGTGAAAGTGGGTGTTTTTCCATGGTGGGTCATATGGGTTTGTCGGAAATTGATCAGCAGATGGGTGTGGCGCCGTCTTTTTGTCCGCCGGAAACCTTAAACTTGGAGTTTCAATCAGGGTATAATATTATAATATTCATAAATGGAGTTCCAACAGAAGTGCCAAAAGGGCCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTGGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACTCTTTGCAGCATGGTGAAAGCTATTTTCTGGTTTCAAGACCGACATGA | 744 | 50.4 | MENHGDDPNSSERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQATGGGGGGGGGGGDNGGRYNSGVMNFAGSSSYFGGGSSSSSSSASGGGGGGGSSESGCFSMVGHMGLSEIDQQMGVAPSFCPPETLNLEFQSGYNIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHSLQHGESYFLVSRPT | 247 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2226971 | 2229292 | + | CmoCh14G004620.1 | Cmo14g00462 | 395728 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00462 | 247 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 9 | 246 | - | - | |
| Cmo14g00462 | 247 | MobiDBLite | consensus disorder prediction | 77 | 106 | - | - | |
| Cmo14g00462 | 247 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 9 | 246 | IPR044558 | GO:0003700|GO:0048830 | |
| Cmo14g00462 | 247 | ProSiteProfiles | 'Homeobox' domain profile. | 14 | 79 | IPR001356 | GO:0003677 | |
| Cmo14g00462 | 247 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cmo14g00462 | 247 | SUPERFAMILY | Homeodomain-like | 10 | 86 | IPR009057 | - | |
| Cmo14g00462 | 247 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cmo14g00462 | 247 | SMART | HOX_1 | 16 | 83 | IPR001356 | GO:0003677 | |
| Cmo14g00462 | 247 | Gene3D | - | 18 | 85 | - | - | |
| Cmo14g00462 | 247 | Pfam | Homeodomain | 18 | 78 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g01301 | Cmo-Chr3:9804730 | Cmo14g00462 | Cmo-Chr14:2226971 | 3.77E-15 | dispersed | |
| Cmo07g00209 | Cmo-Chr7:1051693 | Cmo14g00462 | Cmo-Chr14:2226971 | 1.31E-15 | dispersed | |
| Cmo14g00462 | Cmo-Chr14:2226971 | Cmo13g01029 | Cmo-Chr13:8676452 | 2.78E-16 | dispersed | |
| Cmo14g00462 | Cmo-Chr14:2226971 | Cmo06g00062 | Cmo-Chr6:391721 | 1.54E-109 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10943 | PF00046 | Homeodomain | 6.20E-13 | CL0123 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00462 | - | - | csv:101207317 | 326.635 |