Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00462 ATGGAAAATCACGGCGATGATCCAAATAGCTCCGAGAGGGCGGAGCCGGTGAGGTCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTCTTGAATCTATTTTCAATAGTGGAATGGTGAATCCACCAAAAGATGAGACGGTCAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTTGGCGACGCCAATGTTTTCTACTGGTTTCAGAATCGCCGCTCCCGGTCTCGCCGCCGCCAGCGTCAGCTTCAGGCTGCCGCTACTCATCAAGCTACCGGCGGTGGCGGTGGTGGTGGTGGTGGTGGTGGCGATAACGGCGGTCGCTACAATAGTGGTGTTATGAATTTTGCTGGTTCCTCCTCTTACTTCGGAGGTGGGTCGTCGTCGTCGTCGTCCTCTGCTTCTGGTGGCGGTGGCGGCGGTGGTAGTAGTGAAAGTGGGTGTTTTTCCATGGTGGGTCATATGGGTTTGTCGGAAATTGATCAGCAGATGGGTGTGGCGCCGTCTTTTTGTCCGCCGGAAACCTTAAACTTGGAGTTTCAATCAGGGTATAATATTATAATATTCATAAATGGAGTTCCAACAGAAGTGCCAAAAGGGCCAGTGGACATGAAGGCAATGTTTGGGCAAGAGACAGTGTTGGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTGCACTCTTTGCAGCATGGTGAAAGCTATTTTCTGGTTTCAAGACCGACATGA 744 50.4 MENHGDDPNSSERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQATGGGGGGGGGGGDNGGRYNSGVMNFAGSSSYFGGGSSSSSSSASGGGGGGGSSESGCFSMVGHMGLSEIDQQMGVAPSFCPPETLNLEFQSGYNIIIFINGVPTEVPKGPVDMKAMFGQETVLVHSSGLPVLTNEFGISLHSLQHGESYFLVSRPT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2226971 2229292 + CmoCh14G004620.1 Cmo14g00462 395728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00462 247 PANTHER WUSCHEL-RELATED HOMEOBOX 11 9 246 - -
Cmo14g00462 247 MobiDBLite consensus disorder prediction 77 106 - -
Cmo14g00462 247 PANTHER WUSCHEL-RELATED HOMEOBOX 11 9 246 IPR044558 GO:0003700|GO:0048830
Cmo14g00462 247 ProSiteProfiles 'Homeobox' domain profile. 14 79 IPR001356 GO:0003677
Cmo14g00462 247 MobiDBLite consensus disorder prediction 1 20 - -
Cmo14g00462 247 SUPERFAMILY Homeodomain-like 10 86 IPR009057 -
Cmo14g00462 247 MobiDBLite consensus disorder prediction 1 21 - -
Cmo14g00462 247 SMART HOX_1 16 83 IPR001356 GO:0003677
Cmo14g00462 247 Gene3D - 18 85 - -
Cmo14g00462 247 Pfam Homeodomain 18 78 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00462 - - - csv:101207317 326.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01301 Cmo-Chr3:9804730 Cmo14g00462 Cmo-Chr14:2226971 3.77E-15 dispersed
Cmo07g00209 Cmo-Chr7:1051693 Cmo14g00462 Cmo-Chr14:2226971 1.31E-15 dispersed
Cmo14g00462 Cmo-Chr14:2226971 Cmo13g01029 Cmo-Chr13:8676452 2.78E-16 dispersed
Cmo14g00462 Cmo-Chr14:2226971 Cmo06g00062 Cmo-Chr6:391721 1.54E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10943 PF00046 Homeodomain 6.20E-13 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g00462 Cmo_Chr14 FPKM 39.614876 43.094444 5.158844 5.262377 3.759963 4.377626 4.497858 5.747589 5.852809 5.882343