Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00500 | ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCTCCGGTTGTTGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGGGACCTGGGGTCCGGCGAGCCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGTGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGAGCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCGTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAACGATTAA | 834 | 54.68 | MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2480536 | 2481369 | - | CmoCh14G005000.1 | Cmo14g00500 | 395766 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00500 | 277 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 277 | - | - | |
| Cmo14g00500 | 277 | MobiDBLite | consensus disorder prediction | 245 | 277 | - | - | |
| Cmo14g00500 | 277 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 91 | 142 | IPR017930 | - | |
| Cmo14g00500 | 277 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 277 | IPR044841 | GO:0003700|GO:0006355 | |
| Cmo14g00500 | 277 | SUPERFAMILY | Homeodomain-like | 83 | 143 | IPR009057 | - | |
| Cmo14g00500 | 277 | Pfam | Myb-like DNA-binding domain | 90 | 138 | IPR001005 | - | |
| Cmo14g00500 | 277 | Gene3D | - | 83 | 145 | - | - | |
| Cmo14g00500 | 277 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 87 | 139 | IPR006447 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g01147 | Cmo-Chr7:6151823 | Cmo14g00500 | Cmo-Chr14:2480536 | 5.70E-117 | dispersed | |
| Cmo13g00108 | Cmo-Chr13:597925 | Cmo14g00500 | Cmo-Chr14:2480536 | 4.19E-33 | dispersed | |
| Cmo14g00500 | Cmo-Chr14:2480536 | Cmo20g00418 | Cmo-Chr20:1984641 | 3.21E-32 | dispersed | |
| Cmo14g00500 | Cmo-Chr14:2480536 | Cmo06g00028 | Cmo-Chr6:191731 | 2.52E-133 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10949 | PF00249 | Myb_DNA-binding | 1.90E-08 | CL0123 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00500 | - | - | csv:101216059 | 404.06 |