Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00514 ATGGGTAGTAGAACAGTGAAGGTTGGTGCCGACGATATAAACAAAAAGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCGGACTTAAGAACGCTCGAGCAAACTCTTGGATTTCACATAGAAAATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCGAATAGTTCGACTCTGAACAACAACATCCAGTTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTACCAACTGCTATCATGGGCTCTCAAACATTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACGTCGGGTGGTCCTCATGAAAACTGGGGAGAGTCTAACATGGCCGACGTCAGCACAAGAACTGATACCTCCACGGATGACACAGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGTCGTGTACGATTCTAGCAACAAATCGAAAGAAAAAACACCTGATCAGAAGAGCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTACGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGAAAGTGTTAAGATGCATAAATCTCTGTCACAATTTGTGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGAAATGGGGCCCTAGCATTTGATGCAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACATGCGGGCGACACTGAACTTCGAACTGTCGTTGATAACGTGACTACACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCAGAGATCCTGAAGCTTCTTATAAACCAATTAGAGCCTTTGACTGAGCAGCAGCTAATGGGCATATGTAACCTGCAACAATTATCACAACAAGCAGAAGATGCTCTCTCGCAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCACACCTGCAACGTCGGGATCGTCTGGGAACGTCGCAAATTATATGGGTCAAATGGCCATGGCTATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGCTGCATCTTGTTTCATTTACATTGCCTATTTCTTTCATCTTACGTTTCCTCAAATCGGCAGCACAAGTTGAAAAAGCTGATAATCTTCGTCAACAAACTCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGGCTTAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCTCGAGAGTTTAATGATTACAAGCCTAAGTTCATATTGATCAACTAA 1560 44.36 MGSRTVKVGADDINKKVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDLRTLEQTLGFHIENVDLTRNPLYNQIKSNSSTLNNNIQFGSLIKPLASTDVNLPTAIMGSQTLPLQKESNPNLVSTSGGPHENWGESNMADVSTRTDTSTDDTDDKSQRLDKDQGNSLVVYDSSNKSKEKTPDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQESVKMHKSLSQFVQGIFISNSGDQAHSMSGNGALAFDAEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLINQLEPLTEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQLHLVSFTLPISFILRFLKSAAQVEKADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPREFNDYKPKFILIN 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2538400 2546396 - CmoCh14G005140.1 Cmo14g00514 395780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00514 519 ProSiteProfiles DOG1 domain profile. 262 504 IPR025422 GO:0006351|GO:0043565
Cmo14g00514 519 SMART brlzneu 179 243 IPR004827 GO:0003700|GO:0006355
Cmo14g00514 519 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Cmo14g00514 519 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Cmo14g00514 519 Pfam Seed dormancy control 280 354 IPR025422 GO:0006351|GO:0043565
Cmo14g00514 519 SUPERFAMILY Leucine zipper domain 183 228 IPR046347 GO:0003700|GO:0006355
Cmo14g00514 519 MobiDBLite consensus disorder prediction 145 160 - -
Cmo14g00514 519 Coils Coil 202 236 - -
Cmo14g00514 519 MobiDBLite consensus disorder prediction 174 195 - -
Cmo14g00514 519 MobiDBLite consensus disorder prediction 110 200 - -
Cmo14g00514 519 Pfam bZIP transcription factor 183 225 IPR004827 GO:0003700|GO:0006355
Cmo14g00514 519 PANTHER TRANSCRIPTION FACTOR TGA9 457 507 - -
Cmo14g00514 519 CDD bZIP_HBP1b-like 183 229 - -
Cmo14g00514 519 PANTHER TRANSCRIPTION FACTOR TGA9 63 435 - -
Cmo14g00514 519 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 457 507 - -
Cmo14g00514 519 Gene3D - 182 238 - -
Cmo14g00514 519 MobiDBLite consensus disorder prediction 110 144 - -
Cmo14g00514 519 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 435 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00079 Cmo14g00514 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02157 Cmo-Chr4:15311231 Cmo14g00514 Cmo-Chr14:2538400 3.32E-138 dispersed
Cmo12g00101 Cmo-Chr12:546760 Cmo14g00514 Cmo-Chr14:2538400 4.08E-142 dispersed
Cmo14g00514 Cmo-Chr14:2538400 Cmo18g00857 Cmo-Chr18:9890829 1.74E-180 dispersed
Cmo14g00514 Cmo-Chr14:2538400 Cmo06g00021 Cmo-Chr6:139954 0 wgd
Cmo14g00514 Cmo-Chr14:2538400 Cmo06g00015 Cmo-Chr6:104664 3.42E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10951 PF14144 DOG1 2.50E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00514 K14431 - csv:101219149 826.624