Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00544 ATGGCTTCCTCGTCCTCTGATCCTGGCTTCAAACACGAACCAGGTTCTTGTAGTGCTGCTGCTGCTGTTGCCGGAGGAGGAGCGGCGGAATCTTCGGAAGTTGTAATGGCGAATGATCAGCTTTTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAGCGGATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGTTCTATATACCGCGGAGTCACAAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACATGGAACCAGAACCAGAACAAAAAGGGAAAGCAAGTGTATCTGGGGGCATATGATGAAGAAGAGGCCGCTGCTAGGGCTTACGATTTGGCTGCGTTAAAATATTGGGGTCCTGGGACTCTTATTAACTTTCCAGTGACTGATTATTCAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCCCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGAGGTCTCTCGAGTCGTTGGGATCCTTCATTTAGTCGTGTGCCGGGCCCTGAGTATATCAACAGCATAAACTATGGTGCTGGAGATGATCAAGCAACAGAAGGTGAGTTCGTCCCAGGCTTCTGCATTGAAAAGAAGATTGACTTAACAAGTCACATTAAATGGTGGGGGCCCAACAAAACTCGAACGGCAAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAACATAGTAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGATGTAAAGAAGACTACTTCCAGGGTCTCTGCTTTAAGCATCTTGTCACGTTCCGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAATGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGATAGATCATGGCAAAGTGGTTGAAACACATACAAGTCATGGTGGTGATCCCAGCGAGAGATATGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTTCTTTCTTAACTGCACCTCTTCTTAGTAGTTACAACACAGTTGATCCACTGGGAGATCCGATTCATTGGACATCTCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTGCAGCCGAGGTTACAAAAACGGAAACCTCTTCAACATACACTTTGTTTCAACCCGAGGAATAA 1305 45.21 MASSSSDPGFKHEPGSCSAAAAVAGGGAAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYSRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFSRVPGPEYINSINYGAGDDQATEGEFVPGFCIEKKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSSCAGEVGSELKALGQTTRPTEPYEMPCLGTLHDVKKTTSRVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKIDHGKVVETHTSHGGDPSERYGVAFGTSGGLPLQRNMFPLTSFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRAAEVTKTETSSTYTLFQPEE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2761822 2765915 + CmoCh14G005440.1 Cmo14g00544 395810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00544 434 SMART rav1_2 76 148 IPR001471 GO:0003700|GO:0006355
Cmo14g00544 434 SUPERFAMILY DNA-binding domain 75 143 IPR016177 GO:0003677
Cmo14g00544 434 MobiDBLite consensus disorder prediction 246 260 - -
Cmo14g00544 434 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Cmo14g00544 434 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Cmo14g00544 434 MobiDBLite consensus disorder prediction 240 261 - -
Cmo14g00544 434 Gene3D AP2/ERF domain 76 144 IPR036955 GO:0003700|GO:0006355
Cmo14g00544 434 ProSiteProfiles AP2/ERF domain profile. 76 142 IPR001471 GO:0003700|GO:0006355
Cmo14g00544 434 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 24 432 - -
Cmo14g00544 434 PANTHER BNAA03G19580D PROTEIN 24 432 - -
Cmo14g00544 434 Pfam AP2 domain 76 134 IPR001471 GO:0003700|GO:0006355
Cmo14g00544 434 Coils Coil 309 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00544 Cmo-Chr14:2761822 Cmo04g01529 Cmo-Chr4:7814003 4.50E-55 dispersed
Cmo14g00544 Cmo-Chr14:2761822 Cmo06g00924 Cmo-Chr6:6686532 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10956 PF00847 AP2 3.50E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00544 K09285 - csv:101206434 770.0