Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00544 | ATGGCTTCCTCGTCCTCTGATCCTGGCTTCAAACACGAACCAGGTTCTTGTAGTGCTGCTGCTGCTGTTGCCGGAGGAGGAGCGGCGGAATCTTCGGAAGTTGTAATGGCGAATGATCAGCTTTTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAGCGGATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGTTCTATATACCGCGGAGTCACAAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACATGGAACCAGAACCAGAACAAAAAGGGAAAGCAAGTGTATCTGGGGGCATATGATGAAGAAGAGGCCGCTGCTAGGGCTTACGATTTGGCTGCGTTAAAATATTGGGGTCCTGGGACTCTTATTAACTTTCCAGTGACTGATTATTCAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCCCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGAGGTCTCTCGAGTCGTTGGGATCCTTCATTTAGTCGTGTGCCGGGCCCTGAGTATATCAACAGCATAAACTATGGTGCTGGAGATGATCAAGCAACAGAAGGTGAGTTCGTCCCAGGCTTCTGCATTGAAAAGAAGATTGACTTAACAAGTCACATTAAATGGTGGGGGCCCAACAAAACTCGAACGGCAAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAACATAGTAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGATGTAAAGAAGACTACTTCCAGGGTCTCTGCTTTAAGCATCTTGTCACGTTCCGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAATGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGATAGATCATGGCAAAGTGGTTGAAACACATACAAGTCATGGTGGTGATCCCAGCGAGAGATATGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTTCTTTCTTAACTGCACCTCTTCTTAGTAGTTACAACACAGTTGATCCACTGGGAGATCCGATTCATTGGACATCTCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTGCAGCCGAGGTTACAAAAACGGAAACCTCTTCAACATACACTTTGTTTCAACCCGAGGAATAA | 1305 | 45.21 | MASSSSDPGFKHEPGSCSAAAAVAGGGAAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYSRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFSRVPGPEYINSINYGAGDDQATEGEFVPGFCIEKKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSSCAGEVGSELKALGQTTRPTEPYEMPCLGTLHDVKKTTSRVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKIDHGKVVETHTSHGGDPSERYGVAFGTSGGLPLQRNMFPLTSFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRAAEVTKTETSSTYTLFQPEE | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 2761822 | 2765915 | + | CmoCh14G005440.1 | Cmo14g00544 | 395810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00544 | 434 | SMART | rav1_2 | 76 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00544 | 434 | SUPERFAMILY | DNA-binding domain | 75 | 143 | IPR016177 | GO:0003677 | |
Cmo14g00544 | 434 | MobiDBLite | consensus disorder prediction | 246 | 260 | - | - | |
Cmo14g00544 | 434 | PRINTS | Ethylene responsive element binding protein signature | 77 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00544 | 434 | PRINTS | Ethylene responsive element binding protein signature | 124 | 144 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00544 | 434 | MobiDBLite | consensus disorder prediction | 240 | 261 | - | - | |
Cmo14g00544 | 434 | Gene3D | AP2/ERF domain | 76 | 144 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo14g00544 | 434 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00544 | 434 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 24 | 432 | - | - | |
Cmo14g00544 | 434 | PANTHER | BNAA03G19580D PROTEIN | 24 | 432 | - | - | |
Cmo14g00544 | 434 | Pfam | AP2 domain | 76 | 134 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00544 | 434 | Coils | Coil | 309 | 337 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00544 | Cmo-Chr14:2761822 | Cmo04g01529 | Cmo-Chr4:7814003 | 4.50E-55 | dispersed | |
Cmo14g00544 | Cmo-Chr14:2761822 | Cmo06g00924 | Cmo-Chr6:6686532 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10956 | PF00847 | AP2 | 3.50E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00544 | K09285 | - | csv:101206434 | 770.0 |