Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00552 ATGGTAATGGCCTATGCTTACTTTCAATCCTTTGATGTTATATCACAAAACAAAGTTTTTATCCCTTTATTTACGTACATCATACTCTGTGCAGCCGTAAATCGGGATGAGTACCATGTGTCAGATGAGGCTAGGAATGCTGGCTATAATATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTATAAGGCATTGAAATTCCATGGTGGTGTTGAAGGACTTTCAAGGAAAGTTTCTGTCGCACTAGATGCAGGTGTTAGTGAAAAGGATGTATCGAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAGCCTTCCAGATCTTTTTTGGTGTTTCTATGGGAAGCATTACATGACGTGACATTAATCATCCTAATATTCTGTGCGCTTATTTCTTTAGGCGTTGGGATTGCCACTGAAGGATGGCCTAAGGGGACCTATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAGGCAGTCTTTGCAATTCAAGGATCTTGACCGGGAAAAGCAAAAAATTGATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGGAATCAGGTTCCTGCTGATGGGGTTTTCATATCAGGATACAGTCTGCTAATTGATGAATCCAGTTTATCTGGTGAGAGTGAACCAGTGAACATAGGTGTGGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGTTGGTAACAACAGTTGGCATGAAAACTGAATGGGGAAAACTAATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCCACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGTGGCAAAAGCTGCTCACCATCAATTTACGAAATGGAATTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCATTGCAGTTACAATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACGTTGAGCCTTGCCTTTGCTATGAAGAAACTGATGACCGAAAGAGCACTAGTTAGGCACCTGTCTGCATGTGAAACGATGGGTTCGGCCAGTTGCATTTGCACAGATAAGACAGGGACGTTAACCACAAACCACATGATAGTTAGCCGTGCATGGGTTTGTGAACATTTTATGGAGAATGAAGACCATGGGAGTGTAGACAAATTGAAATCGGAGATCTCTGAAAACGTTTTAGGCATACTTTTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAGGACGGGCAGAACTCGATCGTTGGTGGAACACCAACGGAATCAGCACTATTAGAGTTTGGCATCCATTTGGGTGGGGATTTTCATGCCCAACGTACAGAATATAATATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCACTTCCTAATGGTGGTGGGGTTAGAGCTTTTGTCAAAGGTGCATCTGAAATTATACTAGGAATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATTGATTTAACAGAAGAGACGGTAAAGAATGCTACAGACGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGATTTAGGGGACCCCAGTGACAAATCTATTCCAGATGATGGATATACATTAATTACAGTTGTTGGAATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTGAAACTTGTTTAAAAGCTGGAATAACTGTGCGTATGGTTACTGGTGACAATATTAATACAGCGAAGGCTATTGCCAAAGAATGTGGTATACTTACACACGGTGGTTTAGCTATAGAAGGACCAGACTTCCGTAATTTGTCTACAGAACAGATGAAGCAAGTTATACCAAAACTCCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAATACACATTGGTTAACAATTTGCGGAGTATGTTTGGCGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGGACTGAGGTGGCCAAAGAAAATGCCGATGTCATCATAATGGATGACAATTTTTCAACCATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTATATTAACATACAAAAATTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGTGAATTTTTCATCAACGAAGTTGGATCTGCTCCTCTTACGGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCCTTGGCCCTGGCCACAGAGCCTCCAAATGATGCACTCATGCAGAGACCCCCAATTCCCAAGGGGGTTAGCTTTATTACCAAAGCCATGTGGAGGAACATTGTTGGTCAGAGTATCTATCAACTTGCTGTTCTTGCAGTTCTTAATTTTAGGGGAAAGCAACTTCTTGGACTTAGTGGAGACGATTCCACGAAAGAACTTAATACTTTGATATTTAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATCAACAGCCGTGAGATAGAAAAGATCAACATATTCCGAGGGATGTTCAGCAGCTGGATATTCTTGGGAGTAATGGCATCCACAGTTGGGTTTCAAATAATAATCGTTGAACTTCTGGGTGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTGTGGGGACTGAGCGTTTTGATTGGATTTGTAAGCATGCCAGTTGCAGTTGTGTTGAAGTTCATCCCTGTTCATAAGGAAACAGTCCATCATGATGGCTACGAACCACTCCCTTCCGGCCCAGAGCTGGCTTGA 2991 42.09 MVMAYAYFQSFDVISQNKVFIPLFTYIILCAAVNRDEYHVSDEARNAGYNIHPDELASIVRSHDYKALKFHGGVEGLSRKVSVALDAGVSEKDVSKRQEIYGYNRYTEKPSRSFLVFLWEALHDVTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYRQSLQFKDLDREKQKIDVDVTRDGLRKKVSIYDLVVGDIVHLSIGNQVPADGVFISGYSLLIDESSLSGESEPVNIGVEKPFLLSGTKVQDGSGKMLVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLVAKAAHHQFTKWNSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMTERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCEHFMENEDHGSVDKLKSEISENVLGILLQSIFQNTSCEVTKDKDGQNSIVGGTPTESALLEFGIHLGGDFHAQRTEYNILKVEPFNSVRKKMSVLVALPNGGGVRAFVKGASEIILGMCDKYIDSNGESIDLTEETVKNATDVINSFANEALRTLCLAFKDLGDPSDKSIPDDGYTLITVVGIKDPVRPGVKEAVETCLKAGITVRMVTGDNINTAKAIAKECGILTHGGLAIEGPDFRNLSTEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGEFFINEVGSAPLTAVQLLWVNLIMDTLGALALATEPPNDALMQRPPIPKGVSFITKAMWRNIVGQSIYQLAVLAVLNFRGKQLLGLSGDDSTKELNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMASTVGFQIIIVELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVHKETVHHDGYEPLPSGPELA 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2805352 2811892 + CmoCh14G005520.1 Cmo14g00552 395818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00552 996 Pfam E1-E2 ATPase 187 383 - -
Cmo14g00552 996 PRINTS P-type cation-transporting ATPase superfamily signature 405 419 - -
Cmo14g00552 996 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Cmo14g00552 996 PRINTS P-type cation-transporting ATPase superfamily signature 707 726 - -
Cmo14g00552 996 PRINTS P-type cation-transporting ATPase superfamily signature 626 636 - -
Cmo14g00552 996 PRINTS P-type cation-transporting ATPase superfamily signature 236 250 - -
Cmo14g00552 996 PRINTS P-type cation-transporting ATPase superfamily signature 731 743 - -
Cmo14g00552 996 Gene3D - 120 974 - -
Cmo14g00552 996 PANTHER CALCIUM-TRANSPORTING ATPASE 29 982 - -
Cmo14g00552 996 PRINTS H+-transporting ATPase (proton pump) signature 565 583 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo14g00552 996 PRINTS H+-transporting ATPase (proton pump) signature 707 723 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo14g00552 996 PRINTS H+-transporting ATPase (proton pump) signature 739 764 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo14g00552 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 673 788 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo14g00552 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 503 652 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo14g00552 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 157 426 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo14g00552 996 Gene3D - 402 752 IPR023214 -
Cmo14g00552 996 SFLD Haloacid Dehalogenase 387 759 - -
Cmo14g00552 996 Pfam Cation transport ATPase (P-type) 461 546 - -
Cmo14g00552 996 CDD P-type_ATPase_Ca_PMCA-like 94 848 - -
Cmo14g00552 996 SMART Cation_ATPase_N_a_2 64 142 IPR004014 -
Cmo14g00552 996 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 61 976 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cmo14g00552 996 SUPERFAMILY Calcium ATPase, transduction domain A 191 286 IPR008250 -
Cmo14g00552 996 Gene3D - 88 288 - -
Cmo14g00552 996 Gene3D - 415 611 IPR023299 GO:0000166
Cmo14g00552 996 SUPERFAMILY HAD-like 404 820 IPR036412 -
Cmo14g00552 996 Pfam Cation transporting ATPase, C-terminus 800 974 IPR006068 -
Cmo14g00552 996 SFLD p-type atpase 387 759 IPR044492 -
Cmo14g00552 996 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 977 IPR023298 -
Cmo14g00552 996 ProSitePatterns E1-E2 ATPases phosphorylation site. 407 413 IPR018303 -
Cmo14g00552 996 PANTHER CATION TRANSPORTING ATPASE 29 982 - -
Cmo14g00552 996 Pfam Cation transporter/ATPase, N-terminus 71 137 IPR004014 -
Cmo14g00552 996 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 411 616 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00282 Cmo-Chr9:1251997 Cmo14g00552 Cmo-Chr14:2805352 0 dispersed
Cmo12g01137 Cmo-Chr12:10355245 Cmo14g00552 Cmo-Chr14:2805352 0 dispersed
Cmo14g00552 Cmo-Chr14:2805352 Cmo15g00812 Cmo-Chr15:4031016 0 dispersed
Cmo14g00552 Cmo-Chr14:2805352 Cmo07g00657 Cmo-Chr7:2953435 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00552 K01537 - csv:101206199 1671.37