Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00572 ATGGCGACCTCAAAACCTCAAAGGTCACCTGAGGAGGTTGAAGACATTATTCTTCGTAAGGTCTTCCTTGTCTCTCTCACCGGTTCTTCCGATTCCGATTCTCGGATCGTCTATCTCGAGCAAACCGCCGCCGAACTCCTTAGCGAGAGCAAGCAATTGAGGATTTCAAGAGATGTGATGGAGCGCCTCATAATCGATCGCCTTTCCGGAAATTTCCCATCCGCGGAGCCCCCTTTTCAGTACCTAATCGGTTGCTACCGTCGAGCTCACGACGAGAGTAAGAAAATCGCTTCTATGAAGGATAAGAATTTGCGTTCTGATATTGAAATTGCGCTCAAGCAAGCCAAGAAGTTGGCGATTTCGTATTGTAGGATTCATTTGGGGAATCCTGAATTGTTTTCGGGTGGGGATTTGGGTGCTGAGTCCAACACTTCGCCTTTACTTCCGTTGGTTTTCTCTGAGGTTGGGAGCTCCGTGGATGGATTTGGGTCTACTAGCAGTGTCGGTGGTCTTCAGTGCCCTCCTGGTTTCTTGGAGGAGTTTCTACGTGACTCGGATTTTGATACATTAGACCCTATCTTGAAGGGGTTGTATGAGGATTTAAGGGGTGGTGTCCTTAAAGTTTCGGCTCTTGGGAATTTCCAGCAGCCTTTAAGGGCACTTAGGTTTCTGGTCAGTTTTCCTGTTGGTGCTAAATCTCTTGTAAATCACCCTTGGTGGATTCCCACCGGAAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCATTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAACAGTGCTTTTCAGAAGCATCCACTCGTAGACCAACTGATTTACTTTCTTCATTCACTACAATTAAAACTGTCATGAATAGCTTATATGATGGCCTCGCGGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTCGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGGATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACTAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGTAACCGCTTGGAGCTTAGAGGATTAACTGCTCTACATGCTTCATCGGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAATACTGATAACTCCGGGCAGTTCAGCGACAGTGAAAGTCGCTTGCTGCAATCCCAAGAAGCTTCCAGTTCTGGCAGTAATGCTACTACTGGATCTTCTACTGCAAAGGCAAGATCGAGTAGTGATAAAACTAGGTACCCTTTCATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAACATTTAGTACAGGATATATCTAGGTGTGAAGATACATTATCCACACTCAAAGCCATGCAAGGACAAGGGCCCGCCCCACAACTTGAAATTGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGATGGGACACTAATCCAACAAGCTCTTACTTTCTATCGATTGATGGTTGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCGAAAGCTTTGGATGGAATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGCCCAGAGTATATAAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGCGCATCTGTAACAGCAACATTATTTGAAGGCCACCAACTATCGCTTGAATATCTTGTTAGGAATCTTTTAAAGCTTTACGTGGATATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAATATTGCAGAACTTCTCGAATATCTTTGGCAGGTTCCAAGTCATCGCAGTGCTTGGAGAATGGTAACATTTGCTTCCTTTTCCTCTGTAATTTCTCGGTTGATTGCCATCATGGCTTTATCTTTACATGGCATTTCCCTTAATTTTTCATTCCAGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGCCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACCGCAGAATGGGAACAGCGACCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCCCAAGAAAATATCATTCGAATTGATATGAAATTAGCAAATGAGGATGTGAGTATGCTGGCATTTACGTCAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTACTATCACACTGTTGCGTGGAGCATTTCGATGTCGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCCTGCAACTTGTTGGTCCTCAACGAAGATCTCTTAGTCTGAAAGACCCCGAAAAGTACGAATTCCGTCCTAAAGAGTTGCTCAAGCAGATTGTTCACATGTATGTTCATCTGGCAAGAGGCGATACAGATAATATTTTCCCAGCTGCCATTTCGAAGGACGGGCGATCGTACAATGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTAGGCGAATTGGAGAGGATGGGAGGATCATACAGGAGTTTATTGCTCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCGATGGATGCTGAAGCTACTCTAGGAGATATACCGGACGAGTTCCTCGACCCAATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGACAGCACCGATCCGTTCAACCGGTCTCATCTGACAGCAGACATGCTAATACCGAACGAAGAACTGAAAGCAAGAATCAAAGAATTTATCAGGTCACAAGAAATGAAGAAGCAACTGGACGGAGGAGGGGTTGCTATGCAGAGCAGCAAGACAACCATCCAACCCACAAACGGAGAGATGTTGATTGATTAA 3249 43.43 MATSKPQRSPEEVEDIILRKVFLVSLTGSSDSDSRIVYLEQTAAELLSESKQLRISRDVMERLIIDRLSGNFPSAEPPFQYLIGCYRRAHDESKKIASMKDKNLRSDIEIALKQAKKLAISYCRIHLGNPELFSGGDLGAESNTSPLLPLVFSEVGSSVDGFGSTSSVGGLQCPPGFLEEFLRDSDFDTLDPILKGLYEDLRGGVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGHFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPTDLLSSFTTIKTVMNSLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTQLNTDNSGQFSDSESRLLQSQEASSSGSNATTGSSTAKARSSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEIDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGASVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRSAWRMVTFASFSSVISRLIAIMALSLHGISLNFSFQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVLSHCCVEHFDVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHMYVHLARGDTDNIFPAAISKDGRSYNEQLFNAAAVVLRRIGEDGRIIQEFIALGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNEELKARIKEFIRSQEMKKQLDGGGVAMQSSKTTIQPTNGEMLID 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2913814 2920902 + CmoCh14G005720.1 Cmo14g00572 395838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00572 1082 Pfam U-box domain 982 1053 IPR003613 GO:0004842|GO:0016567
Cmo14g00572 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 981 1059 IPR013083 -
Cmo14g00572 1082 SUPERFAMILY RING/U-box 974 1053 - -
Cmo14g00572 1082 MobiDBLite consensus disorder prediction 422 460 - -
Cmo14g00572 1082 SMART Ubox_2 985 1048 IPR003613 GO:0004842|GO:0016567
Cmo14g00572 1082 PANTHER - 752 1059 - -
Cmo14g00572 1082 PANTHER - 1 724 - -
Cmo14g00572 1082 Coils Coil 518 545 - -
Cmo14g00572 1082 CDD RING-Ubox_UBE4A 984 1052 - -
Cmo14g00572 1082 Pfam Ubiquitin elongating factor core 258 965 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Cmo14g00572 1082 ProSiteProfiles U-box domain profile. 981 1055 IPR003613 GO:0004842|GO:0016567
Cmo14g00572 1082 PANTHER UBIQUITINATION FACTOR E4 752 1059 IPR045132 GO:0000151|GO:0030433|GO:0034450
Cmo14g00572 1082 PANTHER UBIQUITINATION FACTOR E4 1 724 IPR045132 GO:0000151|GO:0030433|GO:0034450
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01193 Cmo-Chr11:6976986 Cmo14g00572 Cmo-Chr14:2913814 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00572 K10597 - csv:101211398 1886.31