Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00573 | ATGGGGATTAAATTTTCCAAGCAAGGTCAGGGGAAGGTTGAAAACCTTAGTTTGCAACACCACCTGATGAATTATCTATCCAAAAAATTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATTACGGATCATATTCTGGCAATGTCATTCCCTGCGGAACGGATGCGTGCTATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTTGATGATAATCATGTTCCACCGCTACAGATGATCAAACTCTTCTGTGAAAATGTCTCTTCATGGATATCATCCCACCCAAAGAATATTGCGGTTATACACTGCATGGCTGGGAAAGGTCGAACCGGATTAATGGTATGTGCCTACTTGGTTTACTGTGGCATGTCAGTGGAGGATGCACTTCACCTGTATGCTCAGAGGCGGACGACCAATAATGAAGGAGTATCAATTCCAAGCCAACGGCGGTATGTTGGCTACTGGGCAAAGTGCCTTTCCTTTCCCAAGGGAATTTATAATGGATCTCCTGAGGTGAAGTTGCCCATACCCTGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATCGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACGTACCCGGAGTTGTTGCAGACAATTTAAGAGTGGTTATGAGAGCAGTAACAGTCCTCGTTATTTTTTATCTTTTGTTGAAGGCGAAAATGAAGAGAACAAGTCGGAAGTAGAGCCCCATTTTATTGTTCAGATGGATACAGAGTGTTCAGCACTATACCACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTTTACCTCTAACTGGAGATGTGCGCATTATATTCTACGCAAAGATGTTTGGAGGGCGTCTGTTCTATGCTTGCTTCAACTCAGCTTTCATTAAAAACAGCTTGATACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCGATTTGTGGTCCATCCTTCTGCTTGGAGTTGTTGCGACGATATCACCGCTGCCGCCGCCGTGGAGTGCCTGCCAGATTTGAGAGGTCAACCTGTTCACAGGCGACATTTTGGAACCCGTTGAAGTCTAAACCACTTGGAATGGACCCCAAGCACACAGGAGAGGTTTTGAAACATTTGGAGAAGCAGGATGAGCTTCTTATGGATGCTTATAGATCAATGTCCCATGAACTACATAAACTTCAGGTAGAAGAAGAAATGCTCATGCGCAAGTTCTATGAAATAATGTCTGCTCATGGTCTAACAAAGAAGAGTGAAGATGGTCGTGATAGTTGTGGCGGCGAAAGGAATGCGTTAGCATCTATTACTGATAGCAAATTGGACTAA | 1524 | 43.5 | MGIKFSKQGQGKVENLSLQHHLMNYLSKKFYIRNLVSKQRRRMLVAGYDLDMSYITDHILAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKLFCENVSSWISSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALHLYAQRRTTNNEGVSIPSQRRYVGYWAKCLSFPKGIYNGSPEVKLPIPCRRELQRIRLYDTVNTESIFFVVSESQEVPSQLYRPSMERTRSCCRQFKSGYESSNSPRYFLSFVEGENEENKSEVEPHFIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNSAFIKNSLIQLRLQDLDKVGKKGRSICGPSFCLELLRRYHRCRRRGVPARFERSTCSQATFWNPLKSKPLGMDPKHTGEVLKHLEKQDELLMDAYRSMSHELHKLQVEEEMLMRKFYEIMSAHGLTKKSEDGRDSCGGERNALASITDSKLD | 507 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2920969 | 2929195 | - | CmoCh14G005730.1 | Cmo14g00573 | 395839 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00573 | 507 | Pfam | C2 domain of PTEN tumour-suppressor protein | 318 | 390 | IPR014020 | - | |
| Cmo14g00573 | 507 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 129 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
| Cmo14g00573 | 507 | Gene3D | - | 275 | 393 | - | - | |
| Cmo14g00573 | 507 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
| Cmo14g00573 | 507 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
| Cmo14g00573 | 507 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 205 | IPR029021 | - | |
| Cmo14g00573 | 507 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
| Cmo14g00573 | 507 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
| Cmo14g00573 | 507 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
| Cmo14g00573 | 507 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 391 | - | - | |
| Cmo14g00573 | 507 | PANTHER | BNAC03G16750D PROTEIN | 1 | 391 | - | - | |
| Cmo14g00573 | 507 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - | |
| Cmo14g00573 | 507 | MobiDBLite | consensus disorder prediction | 482 | 507 | - | - | |
| Cmo14g00573 | 507 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 292 | 391 | IPR035892 | - | |
| Cmo14g00573 | 507 | Pfam | Tyrosine phosphatase family | 146 | 186 | IPR026893 | GO:0004721 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo11g01191 | Cmo-Chr11:6958706 | Cmo14g00573 | Cmo-Chr14:2920969 | 0 | dispersed | |
| Cmo11g01192 | Cmo-Chr11:6965092 | Cmo14g00573 | Cmo-Chr14:2920969 | 1.49E-36 | dispersed | |
| Cmo14g00573 | Cmo-Chr14:2920969 | Cmo19g00605 | Cmo-Chr19:6699930 | 4.33E-43 | dispersed | |
| Cmo14g00573 | Cmo-Chr14:2920969 | Cmo11g01384 | Cmo-Chr11:9670549 | 1.66E-44 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00573 | K01110 | - | csv:101212127 | 744.962 |