Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00574 ATGGCCACAGCCCCATACCCCATATCTCCCAATATCGCTCGAGGGGATGGCGATCTTCTTTTCTCCTGTGCCAAGGATCACAACCCCACCGTCTGGTTCGCTGACAACGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTTTCCAGTATGCTTCACCTTCTTATTGTTACCTTGCGAGATTCAATGCGGCTGATCACTGGAAGCGCGGATCAGACGGCAAAACTGTGGAATGTACAAACTGGACAGCAACTTTTCTCCTTCAATTTCGACTCACCTGCTAGGGCAGTTGATTTCTCTGTCGGGGATAAGCTTGCAGTGATTACCACTGATCCTTTCATGGAGTTGCCTTCTGCTATTCATGTCAAACGCATTGCCAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTCGTTCTTAAGGGTCCCCAGGGAAGAATCAATAGAGCTGTTTGGGGGCCTCTAAATAAGACCATTGTGAGTGCAGGCGAAGATGCTGTTATTCGCATTTGGGATTCTGAGACAGGTAAACTTTTAAAAGAATCAGACAAGGAGACAGGCCATAAAAAAACAATAACTTCCCTTACAAAATCCTCTGATGGTTCACATTTTATCACTGGTTCTTTGGACAAGTCTGCAAGGCTGTGGGATATTAGAACGTTGACGCTCATCAAGACGTATGTGACAGAACGCCCAGTCAATGCAGTTACAATGTCTCCACTTCTTGATCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCGGCTGTGACAACAACTGATCATCGTGCAGGAAAGTTCGAAGCAAAATTTTATGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATCAACGCTCTGGCTTTCAACCCCGATGGAAAGAGCTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTTGACCCCGATTACTTCAACATCAAGCTGTAA 996 46.59 MATAPYPISPNIARGDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSSMLHLLIVTLRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTGESVLVLKGPQGRINRAVWGPLNKTIVSAGEDAVIRIWDSETGKLLKESDKETGHKKTITSLTKSSDGSHFITGSLDKSARLWDIRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2930933 2934599 - CmoCh14G005740.1 Cmo14g00574 395840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 184 - -
Cmo14g00574 331 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Cmo14g00574 331 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Cmo14g00574 331 PRINTS G protein beta WD-40 repeat signature 72 86 IPR020472 -
Cmo14g00574 331 Gene3D - 9 331 IPR015943 GO:0005515
Cmo14g00574 331 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 16 330 - -
Cmo14g00574 331 SUPERFAMILY WD40 repeat-like 16 319 IPR036322 GO:0005515
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 319 - -
Cmo14g00574 331 SMART WD40_4 36 85 IPR001680 GO:0005515
Cmo14g00574 331 SMART WD40_4 182 224 IPR001680 GO:0005515
Cmo14g00574 331 SMART WD40_4 140 179 IPR001680 GO:0005515
Cmo14g00574 331 SMART WD40_4 282 321 IPR001680 GO:0005515
Cmo14g00574 331 SMART WD40_4 227 266 IPR001680 GO:0005515
Cmo14g00574 331 Pfam WD domain, G-beta repeat 143 179 IPR001680 GO:0005515
Cmo14g00574 331 Pfam WD domain, G-beta repeat 38 85 IPR001680 GO:0005515
Cmo14g00574 331 Pfam WD domain, G-beta repeat 193 224 IPR001680 GO:0005515
Cmo14g00574 331 Pfam WD domain, G-beta repeat 288 319 IPR001680 GO:0005515
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 319 IPR001680 GO:0005515
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Cmo14g00574 331 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 8 331 IPR027525 GO:0003743|GO:0005737|GO:0005852
Cmo14g00574 331 CDD WD40 16 319 - -
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 94 IPR001680 GO:0005515
Cmo14g00574 331 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 16 330 - -
Cmo14g00574 331 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Cmo14g00574 331 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01238 Cmo-Chr11:7706204 Cmo14g00574 Cmo-Chr14:2930933 0 dispersed
Cmo14g00574 Cmo-Chr14:2930933 Cmo03g00906 Cmo-Chr3:6970358 9.88E-07 dispersed
Cmo14g00574 Cmo-Chr14:2930933 Cmo10g00625 Cmo-Chr10:2825343 1.40E-34 transposed
Cmo14g00574 Cmo-Chr14:2930933 Cmo11g00550 Cmo-Chr11:2675836 1.37E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00574 K03246 - csv:101211648 609.372