Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00597 ATGGCGACTGGTAATTGGAGCGCCGCCCATGAAGAAGCCTTCATCTCCGTCGGAACTGATTACTCCGATCCCCACCAATCCTTCTTCCGCGACCGATTTCAACAACTCTGCCCTCCCGAGTTCTCAAGAAAGCTTGTGGCGGAGGTGATTTCCACGTATTTGCTTGTGTTTGTCACTTGTGGAGCGGCGGCATTGAGTGTGAGTGATGAGCGACAAGTGTCGAAGCTTGGAGCGTCGATGACCGGTGGGCTCATTGTGACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCCCATATGAACCCTGCTGTCACTTTTGCTTTTGCCGCGGTGAAGCGATTTCCGTGGAAACAGGTTCCATTGTATGCAGCAGCTCAATTAAGCGGAGCTACATCGGCAGCCTTTACACTACGCATACTATTGGACCCAATTAAAGAACTCGGGACTACTTCGCCTTCTGGACCCGAGTTTAAGGCACTTATTGTGGAGATTGTTGTCTCCTTCTGTATGATGTTCGTCACTTCCGCCGTCGCAACCGATACGAAAGCTATAGGAGAGCTTGCAGGTATAGCAGTAGGTTCGTCTGTATGCATCACGTCCATCTTTGCCGGGCCTATATCCGGTGGGTCCATGAACCCCGCGAGATCAATAGGACCCGCCATTGCAAGTTCACATTACGAAGGGATCTGGGTGTACCTAGTCGGGCCAGTTGCAGGGACATTATTGGGAGCATGGTCATATAATTTCATACGAACAAGTGAAAAACATGGGCATCAACTTTCTCTACAATGA 795 50.57 MATGNWSAAHEEAFISVGTDYSDPHQSFFRDRFQQLCPPEFSRKLVAEVISTYLLVFVTCGAAALSVSDERQVSKLGASMTGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVKRFPWKQVPLYAAAQLSGATSAAFTLRILLDPIKELGTTSPSGPEFKALIVEIVVSFCMMFVTSAVATDTKAIGELAGIAVGSSVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVAGTLLGAWSYNFIRTSEKHGHQLSLQ 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3025643 3028154 + CmoCh14G005970.1 Cmo14g00597 395863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00597 264 Pfam Major intrinsic protein 40 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 Gene3D Glycerol uptake facilitator protein. 18 261 IPR023271 -
Cmo14g00597 264 CDD MIP 43 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Cmo14g00597 264 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo14g00597 264 PANTHER AQUAPORIN NIP2-1 31 262 IPR034294 -
Cmo14g00597 264 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 31 262 - -
Cmo14g00597 264 SUPERFAMILY Aquaporin-like 35 254 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01044 Cmo-Chr11:5789335 Cmo14g00597 Cmo-Chr14:3025643 1.91E-96 dispersed
Cmo11g01045 Cmo-Chr11:5812697 Cmo14g00597 Cmo-Chr14:3025643 1.59E-153 dispersed
Cmo15g01411 Cmo-Chr15:9615452 Cmo14g00597 Cmo-Chr14:3025643 1.70E-54 dispersed
Cmo14g00596 Cmo-Chr14:3016805 Cmo14g00597 Cmo-Chr14:3025643 5.86E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00597 K09874 - csv:101205456 407.142