Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00601 ATGGACTTGACTCCTGCGATTTCCACCGCCGTCGCCGCCATTACCACCGGCGGAGGACCCGTCAAATCCCCTGAATTAGACACCGACACACCCATCAAAATCCAACCCACCACCAAATCTCACCCTTTCACCAACGGTGTCCTCAAGCGCCACCATAACACCCCACCGCCTGTCGTCTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTAGGTGCCCATGCTTTGGACGGCTGTGGCGAGTTCATGCCTTCCTCTACCGCCACCGCCTCCGATCCCACTTCCCTTAAATGCGCTGCTTGCGGCTGCCACCGGAATTTCCACCGCCGTGAGCCGGAGGACTCAATCGCCACCCCGACGACAACCCATATCATTGAGTACCAACCTCACCATCGTCACCACCCACCGCCACCTGCAGCAAATCGAAGCCCAAGCTCTGCCTCTCCTCCACCGATCTCCTCCTCCTACTACCCTTCAGCTCCCCACATGCTTCTTGCCCTTTCCGGCGGACTGCCGGAAAACGCCAGCGGTGGATTCCACCACTCGATTCTGACTCCAAGCCCCAATTCGAGAAAGCGATTCAGAACAAAATTCACTCAAAATCAAAAGGAAAAAATGTATGAATTTGCAGAGAAAGTGGGTTGGAAGATTCAAAAACGAGACGAGGATATGATCCAAGAATTCTGCAGCAACGTCGGAGTAGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTTTGGGGAAAAAAGACGGCACCCAGAACACCAACGGCAGCGGTGGCGACGGCGACGGCGACGGCGATGAGAAAATGAACGGCGGCAACGAGCCACACGCCGCCGCAAATGGGTCGTCTTCTTCATCTTGA 876 54.68 MDLTPAISTAVAAITTGGGPVKSPELDTDTPIKIQPTTKSHPFTNGVLKRHHNTPPPVVYKECLKNHAASLGAHALDGCGEFMPSSTATASDPTSLKCAACGCHRNFHRREPEDSIATPTTTHIIEYQPHHRHHPPPPAANRSPSSASPPPISSSYYPSAPHMLLALSGGLPENASGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSNVGVDRGVLKVWMHNNKNTLGKKDGTQNTNGSGGDGDGDGDEKMNGGNEPHAAANGSSSSS 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3042234 3043109 + CmoCh14G006010.1 Cmo14g00601 395867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00601 291 MobiDBLite consensus disorder prediction 128 154 - -
Cmo14g00601 291 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 260 - -
Cmo14g00601 291 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Cmo14g00601 291 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Cmo14g00601 291 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 191 248 IPR006455 -
Cmo14g00601 291 MobiDBLite consensus disorder prediction 249 264 - -
Cmo14g00601 291 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 260 - -
Cmo14g00601 291 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Cmo14g00601 291 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Cmo14g00601 291 MobiDBLite consensus disorder prediction 30 44 - -
Cmo14g00601 291 MobiDBLite consensus disorder prediction 16 51 - -
Cmo14g00601 291 Gene3D - 183 252 - -
Cmo14g00601 291 MobiDBLite consensus disorder prediction 248 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00601 Cmo-Chr14:3042234 Cmo15g00285 Cmo-Chr15:1345770 1.49E-85 dispersed
Cmo11g01047 Cmo-Chr11:5821076 Cmo14g00601 Cmo-Chr14:3042234 1.87E-144 wgd
Cmo14g00601 Cmo-Chr14:3042234 Cmo04g02895 Cmo-Chr4:20605577 3.47E-91 wgd
Cmo14g00601 Cmo-Chr14:3042234 Cmo04g01734 Cmo-Chr4:8784011 2.62E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10960 PF04770 ZF-HD_dimer 6.20E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00601 - - csv:101204974 447.973