Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00612 ATGGAGGCGGCAGCTTTGGTACTGAAGAATGAGGAGAATCTGAGAATATGTTGGACAGGAGGTCAAGCTCAGGCCATAAGACGTGTAAAGAGACGGCGGAGAGAGCCTGCTGCTGCCGCCGCCGCCGCCGCGGATCAAACTAATAAACAACAGAGTGTGAAGCAACAATCCGATCAAGGTCCGACCACCACTATGAAGCGGAGTTCGAGATTTCGGGGGGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTGTGGGATAAGCTTTCTTGGAACATGACGCAGAAGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGGGCTTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTTCCTGTATCAGAGTATGAGAAAGAGATTGAGACAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAGTACCTGTATCTTGGAACTTACGGCACTCAAGAGGAAGCTGCTCGAGCTTACGACATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAGCCTCCTCCAGTGCCACCCGCTGCCCTCAACGACGTCCATACGACGTCGAATCCCGACAAGGAACTCTGTAACTCCAGATCCATCCCAGTAGAAGAAACTTCGATGTTTGAAAACAATCACTACGACAGCGATCTCTTCCATTCCCTTCAAAAGCAAGATCTCCTCGAGAGCTGTAGCACCCCGATCAATGGCTACGCTAAATCATCTTCTCCATCAGCGCTCGATCTCCTTCTTCGGTCATCATTTTTCAAGAAACTGGTTGAGACCAACTCATCTCTCTCTGTGGATGATGCTGATAATGGAGAAGAGACCAAGACTCATATGCAGCTCAACAGTGTATTTGATGAATTTGGAGACGTCTTCGGTGATAGACTTACAGATGAACAGTTCGTTTGCAGCTCGAACAAAGATCTGCAAGAAAGTGAGCTTCATTCATACTTTAATGGCATGTTTCATCGTTTCAAAGCAGCCTGA 1182 46.7 MEAAALVLKNEENLRICWTGGQAQAIRRVKRRRREPAAAAAAAADQTNKQQSVKQQSDQGPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPVSEYEKEIETMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPVPPAALNDVHTTSNPDKELCNSRSIPVEETSMFENNHYDSDLFHSLQKQDLLESCSTPINGYAKSSSPSALDLLLRSSFFKKLVETNSSLSVDDADNGEETKTHMQLNSVFDEFGDVFGDRLTDEQFVCSSNKDLQESELHSYFNGMFHRFKAA 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3097890 3100503 + CmoCh14G006120.1 Cmo14g00612 395878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00612 393 SUPERFAMILY DNA-binding domain 69 135 IPR016177 GO:0003677
Cmo14g00612 393 MobiDBLite consensus disorder prediction 31 71 - -
Cmo14g00612 393 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 Pfam AP2 domain 168 219 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 Pfam AP2 domain 69 125 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 377 - -
Cmo14g00612 393 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 377 - -
Cmo14g00612 393 Gene3D AP2/ERF domain 168 228 IPR036955 GO:0003700|GO:0006355
Cmo14g00612 393 Gene3D AP2/ERF domain 69 135 IPR036955 GO:0003700|GO:0006355
Cmo14g00612 393 SUPERFAMILY DNA-binding domain 168 229 IPR016177 GO:0003677
Cmo14g00612 393 CDD AP2 69 135 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 ProSiteProfiles AP2/ERF domain profile. 70 133 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 CDD AP2 168 229 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 SMART rav1_2 70 139 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 MobiDBLite consensus disorder prediction 44 69 - -
Cmo14g00612 393 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Cmo14g00612 393 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01062 Cmo14g00612 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00918 Cmo-Chr5:7074597 Cmo14g00612 Cmo-Chr14:3097890 4.99E-18 dispersed
Cmo11g01062 Cmo-Chr11:5906644 Cmo14g00612 Cmo-Chr14:3097890 0 dispersed
Cmo14g00612 Cmo-Chr14:3097890 Cmo04g01529 Cmo-Chr4:7814003 2.28E-83 dispersed
Cmo14g00612 Cmo-Chr14:3097890 Cmo10g00480 Cmo-Chr10:2144602 1.58E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10963 PF00847 AP2 2.50E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00612 - - cpep:111791316 740.339