Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00612 | ATGGAGGCGGCAGCTTTGGTACTGAAGAATGAGGAGAATCTGAGAATATGTTGGACAGGAGGTCAAGCTCAGGCCATAAGACGTGTAAAGAGACGGCGGAGAGAGCCTGCTGCTGCCGCCGCCGCCGCCGCGGATCAAACTAATAAACAACAGAGTGTGAAGCAACAATCCGATCAAGGTCCGACCACCACTATGAAGCGGAGTTCGAGATTTCGGGGGGTCAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTGTGGGATAAGCTTTCTTGGAACATGACGCAGAAGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGGGCTTATGATTTAGCAGCACTCAAGTACTGGGGTGTAACAACCATCACTAATTTTCCTGTATCAGAGTATGAGAAAGAGATTGAGACAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCATCATCATAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAGTACCTGTATCTTGGAACTTACGGCACTCAAGAGGAAGCTGCTCGAGCTTACGACATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAGCCTCCTCCAGTGCCACCCGCTGCCCTCAACGACGTCCATACGACGTCGAATCCCGACAAGGAACTCTGTAACTCCAGATCCATCCCAGTAGAAGAAACTTCGATGTTTGAAAACAATCACTACGACAGCGATCTCTTCCATTCCCTTCAAAAGCAAGATCTCCTCGAGAGCTGTAGCACCCCGATCAATGGCTACGCTAAATCATCTTCTCCATCAGCGCTCGATCTCCTTCTTCGGTCATCATTTTTCAAGAAACTGGTTGAGACCAACTCATCTCTCTCTGTGGATGATGCTGATAATGGAGAAGAGACCAAGACTCATATGCAGCTCAACAGTGTATTTGATGAATTTGGAGACGTCTTCGGTGATAGACTTACAGATGAACAGTTCGTTTGCAGCTCGAACAAAGATCTGCAAGAAAGTGAGCTTCATTCATACTTTAATGGCATGTTTCATCGTTTCAAAGCAGCCTGA | 1182 | 46.7 | MEAAALVLKNEENLRICWTGGQAQAIRRVKRRRREPAAAAAAAADQTNKQQSVKQQSDQGPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPVSEYEKEIETMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYGTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPVPPAALNDVHTTSNPDKELCNSRSIPVEETSMFENNHYDSDLFHSLQKQDLLESCSTPINGYAKSSSPSALDLLLRSSFFKKLVETNSSLSVDDADNGEETKTHMQLNSVFDEFGDVFGDRLTDEQFVCSSNKDLQESELHSYFNGMFHRFKAA | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 3097890 | 3100503 | + | CmoCh14G006120.1 | Cmo14g00612 | 395878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00612 | 393 | SUPERFAMILY | DNA-binding domain | 69 | 135 | IPR016177 | GO:0003677 | |
Cmo14g00612 | 393 | MobiDBLite | consensus disorder prediction | 31 | 71 | - | - | |
Cmo14g00612 | 393 | ProSiteProfiles | AP2/ERF domain profile. | 169 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | Pfam | AP2 domain | 168 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | Pfam | AP2 domain | 69 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 10 | 377 | - | - | |
Cmo14g00612 | 393 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 10 | 377 | - | - | |
Cmo14g00612 | 393 | Gene3D | AP2/ERF domain | 168 | 228 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | Gene3D | AP2/ERF domain | 69 | 135 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | SUPERFAMILY | DNA-binding domain | 168 | 229 | IPR016177 | GO:0003677 | |
Cmo14g00612 | 393 | CDD | AP2 | 69 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | CDD | AP2 | 168 | 229 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | SMART | rav1_2 | 169 | 233 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | SMART | rav1_2 | 70 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | MobiDBLite | consensus disorder prediction | 44 | 69 | - | - | |
Cmo14g00612 | 393 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g00612 | 393 | PRINTS | Ethylene responsive element binding protein signature | 209 | 229 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01062 | Cmo14g00612 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00918 | Cmo-Chr5:7074597 | Cmo14g00612 | Cmo-Chr14:3097890 | 4.99E-18 | dispersed | |
Cmo11g01062 | Cmo-Chr11:5906644 | Cmo14g00612 | Cmo-Chr14:3097890 | 0 | dispersed | |
Cmo14g00612 | Cmo-Chr14:3097890 | Cmo04g01529 | Cmo-Chr4:7814003 | 2.28E-83 | dispersed | |
Cmo14g00612 | Cmo-Chr14:3097890 | Cmo10g00480 | Cmo-Chr10:2144602 | 1.58E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10963 | PF00847 | AP2 | 2.50E-09 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00612 | - | - | cpep:111791316 | 740.339 |