Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00614 ATGAGTTCTTACTTTCCCTTTAAGATCATTTCCATAGGTTGGAGTATTAAGGCTGCCTTGCTGCTGCTTTCAATGGCTGCTCTTATGCCATCTCTCAGGGCTGGCATTGCTGAATATGATGACTTTTTGCTGCAACAGGCTGAAGAGGCCAAACAGGCTGCTCTTAAAGCCTACCACCCTCACCCCATGAATGTCACCGATCATTTTAACCATCATGTTTATTTGGCTTTACAGGGAATTCAGGGAAACAATAGCACTAGGAGGAGCTTGAGGCAATACAAAGGACCGTGCTTGGCGACGAACCCGATCGATCGTTGCTGGCGTTGCGACCGAAATTGGGCCAACAACCGTAAGAAACTTGGCTATTGTGTTCTTGGTTTTGGCCGAAAAACCACCGGGGGATTAAGAGGACGTTTCTATACCGTCACCGATGCTTCGGATGCCGATGTCGTAAACCCTAAACCCGGAACCCTCCGACATGCTGTTGTTCAAAAGCGGCCGTTGTGGATTATTTTTGGACGTAGCATGATCATTAGGCTATCTAAGGAACTGTTGGTGACTAGCGATAAGACCATTGATGCTCGTGGTGCCAATGTGCATATTGCTTATGGTGCTGGTATTAGCATTCAATTCGCCCGGAATGTGATCATCCATGGTCTTCACATCCACCACATTCTTTCGGCCTCTGGCGGTATGATCCGAGACGCCGCCGACCATGTCGGCCTTCGAACAGTCAGTGATGGCGATGGCATATCCATCTTTGGATCATCCAATGTCTGGCTCGATCATCTCTCCATGTCCAACTGCCAGGACGGCCTCATCGATGCCATCCAAGGCTCCACGGCTATCACCGTCTCAAACTCTCATTTCACTCATCACAACGACGTGATGCTGTTTGGTGCGAGTGATTCATTTGAAGGCGACTCGGTCATGCAAGTGACTGTCGCTTTCAACCATTTTGGTAAGGGATTGGTGCAGAGGATGCCGCGCTGCAGATGGGGCTTCTTCCATGTTGTCAACAACGATTACACTCACTGGCTCATGTATGCCATTGGTGGCAGCCAACATCCCACCATTATCAGTCAAGGGAATCGTTTCATTGCCCCACCTAACCCTGCTGCAAAACAGATCACGAACAGAAACTACGCAACAGAGAGTGTATGGAAGACATGGACATGGAGATCGGAAGGGGATTTGTTGATGAACGGAGCGTATTTTGTTGAGTCTGGGGATCCAAGCAAGCAAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAGGCCTGGCACTTTTGTTAGGAGGCTGACGCGCTTCTCTGGCTCGCTCAACTCGGCAAATTGTTGCAAATTCCATTGTCCTTCCAATGGGTTCTCGTCGGAATCGTGTTTCGACCACCACCTCCTCTGCTTTGGCTGCCGGCGCGATCCTCTTTCTGTTCATCATCGTTTCCGCCACCTCGGCTCCGATCCTGTTGGTTATGGACCGGCGTTGTCTGGTCATGGGGTTCATCCTTTGGCGACGTTGCACGGCCGGCCGAAGTCCCAGAAGGCGCTGCTTGTTGATTCGATTTTACAGAGTATGTTGGGAGTGTCGCCTACACACTTAGCTTGTAGCTCGATGTTCTTAACTCTGTGGCTGCACATGGTGGTGATAGAAATAAGCTAG 1665 49.91 MSSYFPFKIISIGWSIKAALLLLSMAALMPSLRAGIAEYDDFLLQQAEEAKQAALKAYHPHPMNVTDHFNHHVYLALQGIQGNNSTRRSLRQYKGPCLATNPIDRCWRCDRNWANNRKKLGYCVLGFGRKTTGGLRGRFYTVTDASDADVVNPKPGTLRHAVVQKRPLWIIFGRSMIIRLSKELLVTSDKTIDARGANVHIAYGAGISIQFARNVIIHGLHIHHILSASGGMIRDAADHVGLRTVSDGDGISIFGSSNVWLDHLSMSNCQDGLIDAIQGSTAITVSNSHFTHHNDVMLFGASDSFEGDSVMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAAKQITNRNYATESVWKTWTWRSEGDLLMNGAYFVESGDPSKQRPYSRFDMIKARPGTFVRRLTRFSGSLNSANCCKFHCPSNGFSSESCFDHHLLCFGCRRDPLSVHHRFRHLGSDPVGYGPALSGHGVHPLATLHGRPKSQKALLVDSILQSMLGVSPTHLACSSMFLTLWLHMVVIEIS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3100858 3105585 - CmoCh14G006140.1 Cmo14g00614 395880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00614 554 Gene3D - 100 443 IPR012334 -
Cmo14g00614 554 Pfam Pectate lyase 186 366 IPR002022 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cmo14g00614 554 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cmo14g00614 554 PANTHER PECTATE LYASE 18-RELATED 17 444 IPR045032 GO:0030570
Cmo14g00614 554 Pfam Pectate lyase, N terminus 36 90 IPR007524 GO:0030570
Cmo14g00614 554 SMART amb_all 175 372 IPR002022 -
Cmo14g00614 554 PANTHER PECTATE LYASE 17 444 - -
Cmo14g00614 554 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01064 Cmo14g00614 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01064 Cmo-Chr11:5919240 Cmo14g00614 Cmo-Chr14:3100858 0 dispersed
Cmo12g00634 Cmo-Chr12:4004691 Cmo14g00614 Cmo-Chr14:3100858 0 dispersed
Cmo14g00614 Cmo-Chr14:3100858 Cmo17g00119 Cmo-Chr17:645851 1.61E-159 dispersed
Cmo11g01059 Cmo-Chr11:5904276 Cmo14g00614 Cmo-Chr14:3100858 8.35E-09 wgd
Cmo14g00614 Cmo-Chr14:3100858 Cmo04g01712 Cmo-Chr4:8678089 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00614 K01728 - csv:101202789 765.377