Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00654 ATGATGAGTATGACTATGCATGAGAGTCCAAAGGGGAGGCCATTTTTTCGATCACCGGACGATCTTTACGATGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCATGATCAGGTTTGTTATATTTGCCTTTACTGCCCCATTTTGCCTGCTTCTGCTGCTGCACTCTCTGTGGGACAAAAATTTAGAAGTTGCGTAAAATTGTTGAAGGTTCAAATGTTGGAGAAGAGCTTTGATGAAGACAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGTTGGGGCTGCAACCAAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGTGCTCGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTTGCTTCTGTCTAACTATGACTCAGTTATCAAAGAGAATGCAGATCTTAAATCTCAGGTGGCTTCCTTAACTGAGAAATGTCTGGCTAAAGAGCTGGATGGAGGAGGAGAAGCACCAATTCCATGTGTGACATCAGAGCCTCTTCTAGCAGACATTGGCCATGTCTCCGCCCCACACTCCAGCAGAAAGGCTGAAGATCGTCTCAGTTCAGGGAGCGATGACAGTACGGTGATCGACGATAATTGTCGACAACTCACTGATTGCTGTGATTCTTACTTCCCCAGCAACGAGTATCTGCAATGTGCACCTCTGCCTAATGGGTTGCAAATGGAACATGATGATAGCAATAACAATAGCAACTACTTGTTCTCAGACATGTTTGCAGTAACAGGCCAACAAAATCAGGAGGGACTGGGAGGGCCTCCTGCTTGGTGGACATGGCCTTAG 855 46.43 MMSMTMHESPKGRPFFRSPDDLYDDEYYDEFYPEKKRRLTHDQVCYICLYCPILPASAAALSVGQKFRSCVKLLKVQMLEKSFDEDNKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLLSNYDSVIKENADLKSQVASLTEKCLAKELDGGGEAPIPCVTSEPLLADIGHVSAPHSSRKAEDRLSSGSDDSTVIDDNCRQLTDCCDSYFPSNEYLQCAPLPNGLQMEHDDSNNNSNYLFSDMFAVTGQQNQEGLGGPPAWWTWP 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3312300 3313587 - CmoCh14G006540.1 Cmo14g00654 395920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00654 284 Pfam Homeodomain 67 120 IPR001356 GO:0003677
Cmo14g00654 284 SUPERFAMILY Homeodomain-like 65 132 IPR009057 -
Cmo14g00654 284 Gene3D - 74 120 - -
Cmo14g00654 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 2 44 - -
Cmo14g00654 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 75 250 - -
Cmo14g00654 284 Coils Coil 142 162 - -
Cmo14g00654 284 Pfam Homeobox associated leucine zipper 122 162 IPR003106 GO:0006355|GO:0043565
Cmo14g00654 284 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Cmo14g00654 284 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Cmo14g00654 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 75 250 IPR045224 GO:0003700
Cmo14g00654 284 MobiDBLite consensus disorder prediction 192 211 - -
Cmo14g00654 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 44 IPR045224 GO:0003700
Cmo14g00654 284 SMART HOX_1 64 126 IPR001356 GO:0003677
Cmo14g00654 284 CDD homeodomain 76 123 IPR001356 GO:0003677
Cmo14g00654 284 MobiDBLite consensus disorder prediction 194 209 - -
Cmo14g00654 284 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Cmo14g00654 284 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02845 Cmo14g00654 CCT
Cmo14g00654 Cmo15g00340 CCT
Cmo11g01698 Cmo14g00654 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00654 Cmo-Chr14:3312300 Cmo18g00098 Cmo-Chr18:676252 1.42E-33 dispersed
Cmo11g01698 Cmo-Chr11:12022787 Cmo14g00654 Cmo-Chr14:3312300 3.19E-145 wgd
Cmo14g00654 Cmo-Chr14:3312300 Cmo15g00340 Cmo-Chr15:1583354 3.38E-15 wgd
Cmo14g00654 Cmo-Chr14:3312300 Cmo04g02845 Cmo-Chr4:20319544 5.30E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10967 PF00046 Homeodomain 5.50E-16 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00654 K09338 - csv:101212142 388.267