Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00684 | ATGTCTTCTTCCACCTATTCCAACTCCCCTTGTGCAGCCTGCAAGTTCCTCCGCCGAAAATGCCTACCCGATTGCGTTTTCGCGCCCTATTTCCCGCCGGAGGAGCCCCAAAAGTTCGCCAACGTTCACAAGATCTTCGGTGCCAGCAATGTCAGCAAACTGCTGAACGAAGTCCAGCCACACCAGCGGGACGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCCGTCTACGGCTGCGTTGGCGCCATCTCCATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTCGACGCTACCAACGCCAATCTCATTCGCTACGCCTGCACCGAAATCCCCGCCCCATCTCCGTCCTCGTCCTCGCAATACGCTCGAAGGTCGTCGTCGACCAGCCACGACGGAAGCTCATCGACCTCTAGCTATGGCCACTACTATTCCAATCCCTACTTTTCTCCATGGAGTAACAGCCATAATGGCTCTTGTGGAGATGGCCATGACAAGGCAGAGTTCAAGTAA | 534 | 55.81 | MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPAPSPSSSSQYARRSSSTSHDGSSSTSSYGHYYSNPYFSPWSNSHNGSCGDGHDKAEFK | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3497304 | 3497837 | - | CmoCh14G006840.1 | Cmo14g00684 | 395950 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00684 | 177 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| Cmo14g00684 | 177 | Coils | Coil | 89 | 109 | - | - | |
| Cmo14g00684 | 177 | MobiDBLite | consensus disorder prediction | 120 | 146 | - | - | |
| Cmo14g00684 | 177 | MobiDBLite | consensus disorder prediction | 158 | 177 | - | - | |
| Cmo14g00684 | 177 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
| Cmo14g00684 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 165 | - | - | |
| Cmo14g00684 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 1 | 165 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g02817 | Cmo14g00684 | CCT | |
| Cmo04g02817 | Cmo14g00684 | ECH | |
| Cmo11g01668 | Cmo14g00684 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo14g00684 | Cmo-Chr14:3497304 | Cmo18g00146 | Cmo-Chr18:1025085 | 1.09E-60 | dispersed | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo14g00684 | Cmo-Chr14:3497304 | 9.16E-71 | wgd | |
| Cmo11g01668 | Cmo-Chr11:11836728 | Cmo14g00684 | Cmo-Chr14:3497304 | 3.31E-96 | wgd | |
| Cmo11g00077 | Cmo-Chr11:363795 | Cmo14g00684 | Cmo-Chr14:3497304 | 3.61E-71 | wgd | |
| Cmo13g00898 | Cmo-Chr13:8029265 | Cmo14g00684 | Cmo-Chr14:3497304 | 5.71E-60 | wgd | |
| Cmo14g00684 | Cmo-Chr14:3497304 | Cmo04g02817 | Cmo-Chr4:20199087 | 1.23E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10969 | PF03195 | LOB | 2.90E-42 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00684 | - | - | csv:101219482 | 314.694 |