Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00685 ATGGCGGGTCTCGAGGAACTCAAGAGAAAACTTACTCCCTTGTTTGATGCTGAAAAGGGGCTTTCTGTGGATTCCTCTGTGGACCCTTCTGATTCATATACGTTTTCAGACAATGGAACTGTTAATTTGCTGAGCCGATCGTATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGTACGTCGTGGCTTGCTGATGATTCGGGGAGTAGCGAAAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGGGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCATTGAAGAAGATTAATATCTTTGAAAAGGAGAAAAGGCAGCAGCTTCTTACCGAGATAAGGACACTATGTGAAGCGCCCTGCTCCGAGGGCCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATTAGCATAGCTTTGGAGTACATGGATGGAGGGTCGTTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCCGAGCCTGTCCTTTCGTCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAATGAGACATTTGGTTCACAGAGATATAAAGCCAGCCAATTTACTTGTAAATCTGAAGGGTGAAGCAAAAATTACGGATTTTGGCATAAGTGCCGGCTTGGAGAATTCAATGGCAATGTGTGCTACTTTCGTCGGAACTGTCACGTACATGTCCCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCCCCATCAAAACATAAGTTTTCTCCGGAGTTTTGCTCGTTTGTTGATGCTTGCTTGCAGAAAGACGCAGATGCTAGGCCAACGGCGGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCTTTTGTACAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCCGATATGTTGACCATTCATTATTACTTGCTCTTCGATGGACCTGATGAATTATGGCACCACACAAAGGCTTTATACCATGAAAGATCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGCCAAACTATCAGACATTCGAAGTACATTAGGGGGAGACTGGCCTCTTGAAAAACTAGTTCATGTCGTCGAAAAACTCCAATGCCGAGCTCACGGTCGGGATGGAGTTGCCGTAAGGGTGTCTGGATCCTTCATCGTTGGGAACCAGTTCCTCATATGCGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAAGATCTCTCCATCGACATGGCGAGTAAGAAAATGGGATCCTTCCGTGAGCAGTTCATCATCGAACCGAGTGACCTCATCGGCCGATACTTCATAGCCAAACAAGAGCTTTATATAATTCAATAG 1557 44.44 MAGLEELKRKLTPLFDAEKGLSVDSSVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGMRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDELWHHTKALYHERSTLSFSGKQFSGPNDIFAKLSDIRSTLGGDWPLEKLVHVVEKLQCRAHGRDGVAVRVSGSFIVGNQFLICGDGVQVEGLPNFKDLSIDMASKKMGSFREQFIIEPSDLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3500450 3504670 + CmoCh14G006850.1 Cmo14g00685 395951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00685 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Cmo14g00685 518 CDD PKc_MAPKK_plant_like 84 343 - -
Cmo14g00685 518 SUPERFAMILY Protein kinase-like (PK-like) 85 367 IPR011009 -
Cmo14g00685 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Cmo14g00685 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Cmo14g00685 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00685 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 517 - -
Cmo14g00685 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cmo14g00685 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00685 518 Gene3D Transferase(Phosphotransferase) domain 1 159 361 - -
Cmo14g00685 518 PANTHER - 2 517 - -
Cmo14g00685 518 Gene3D - 362 517 - -
Cmo14g00685 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00685 518 Gene3D Phosphorylase Kinase; domain 1 77 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01353 Cmo-Chr12:11669407 Cmo14g00685 Cmo-Chr14:3500450 1.15E-65 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo14g00685 Cmo-Chr14:3500450 5.14E-45 dispersed
Cmo14g00685 Cmo-Chr14:3500450 Cmo04g02836 Cmo-Chr4:20276632 1.96E-36 dispersed
Cmo14g00685 Cmo-Chr14:3500450 Cmo11g00726 Cmo-Chr11:3514026 6.78E-75 transposed
Cmo14g00685 Cmo-Chr14:3500450 Cmo10g00767 Cmo-Chr10:3558589 1.22E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74835 PF00069 Pkinase 8.00E-60 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00685 K20607 - csv:101217978 989.564