Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00739 | ATGGATTGGGGTTGGGGAACTCTTTCTGGAAAACCCACTTTCCGGGAAAAGAATCACACCCCCCCACCGCCCACAAGTTTCTCTGACTCGATTGGTTCTTCCAATAATAATGAAGAACCCATTCTCGAGGGTTCGAGCCAGGAAAGTTCTTCCTCTAATGGATCCTCCAAAAGGACTCGAATCCTCCAAGGGACTCAAAATCAGTCCTGTTTGGTCGATGGTTGTGACTCTGACCTGAAGAATTGCAAGGAGTATCATCGACGCCATAGGGTCTGCGATTCGCACTCCAAAACCCCTGTTGTGATGGTGAGGGGCGAGGAAAAACGATTCTGTCAACAGTGCAGCAGGTTCCATCCGCTTGGTGAGTTCGATGAGGTGAAGCGAAGCTGCAGAAAGCGGCTTGATGGGCACAATCGCCGCAGGAGGAAGCCTCAACCCGAATCCCTGTTTATGAGTTCAAGAGATTTCCTGTCAAACTGCAAAGGGCCAATTGTGCTGCAGTTCAGTAATCAACAGATTCATGTGCCTGATGAACATGGTAGGAGTTTATGGTCCATGAGGCCTGAAGAAACCTCCATGGTTCCACCAAATTCCTCCGCTTACTTCAGCTATGGAGGAGGAGGAGGAGACAACGAAGAGTTGCCCTTTTTCCTCCACAAAAATGGGACAAGGCAAGGTAAGCAAATGGTGTCTTCTCGGTTATGTTTCAATCAGCAACTTCCTGATGCAATCTCTCAGGGAAGTGAGGTGGGCAGCATGAAACAAGCGGTGCCTACCAATACTTCGCCCGTGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCCAGATGCTGGGTTGAGCTCTTTAGTTCAGTCTCATCTGAGTCTTCCAGTCCAAACTCCAGAGACTGAGCTGCATTTCAGTAGTTTAAGTGACTTCTCTGCCTCCTTTGGCTCCAAGGACAAGCCTGTTTGTGAAACCAATCTTGATAATGGGTTGGAGCTTGAAATGGAGGCATCTGATGGCTTGTTCCAAAGTGAGGCTCCACATAAGTTTCCCATTTCTTGGGAGTAG | 1059 | 48.63 | MDWGWGTLSGKPTFREKNHTPPPPTSFSDSIGSSNNNEEPILEGSSQESSSSNGSSKRTRILQGTQNQSCLVDGCDSDLKNCKEYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKGPIVLQFSNQQIHVPDEHGRSLWSMRPEETSMVPPNSSAYFSYGGGGGDNEELPFFLHKNGTRQGKQMVSSRLCFNQQLPDAISQGSEVGSMKQAVPTNTSPVDSGCALYLLSSHPDAGLSSLVQSHLSLPVQTPETELHFSSLSDFSASFGSKDKPVCETNLDNGLELEMEASDGLFQSEAPHKFPISWE | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3774412 | 3776763 | - | CmoCh14G007390.1 | Cmo14g00739 | 396005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00739 | 352 | PANTHER | TRANSCRIPTION FACTOR SBP FAMILY-RELATED | 46 | 352 | - | - | |
| Cmo14g00739 | 352 | ProSiteProfiles | Zinc finger SBP-type profile. | 67 | 144 | IPR004333 | GO:0003677 | |
| Cmo14g00739 | 352 | Gene3D | - | 61 | 131 | IPR036893 | GO:0003677|GO:0005634 | |
| Cmo14g00739 | 352 | SUPERFAMILY | SBT domain | 69 | 149 | IPR036893 | GO:0003677|GO:0005634 | |
| Cmo14g00739 | 352 | Pfam | SBP domain | 70 | 143 | IPR004333 | GO:0003677 | |
| Cmo14g00739 | 352 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Cmo14g00739 | 352 | MobiDBLite | consensus disorder prediction | 20 | 61 | - | - | |
| Cmo14g00739 | 352 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 46 | 352 | IPR044817 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo11g01608 | Cmo14g00739 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo14g00739 | Cmo-Chr14:3774412 | Cmo17g01376 | Cmo-Chr17:10690874 | 6.77E-46 | dispersed | |
| Cmo10g00045 | Cmo-Chr10:218946 | Cmo14g00739 | Cmo-Chr14:3774412 | 7.36E-41 | wgd | |
| Cmo11g01608 | Cmo-Chr11:11516749 | Cmo14g00739 | Cmo-Chr14:3774412 | 1.47E-169 | wgd | |
| Cmo11g00026 | Cmo-Chr11:113484 | Cmo14g00739 | Cmo-Chr14:3774412 | 3.40E-31 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10973 | PF03110 | SBP | 9.00E-31 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00739 | - | - | cmos:111442201 | 704.516 |