Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00740 ATGGAGAATTACCAGATGTTCTTCCCTTGCTCCAACGGCGGCGGACTGTCGGCTTATAGTCAACCCGACATCTCATCCGGCACCGCCTCTGACATGTTCCGGAATTTCCACGGCGGCGATCCGCAAGCAAGTGGGGTTTTGGGGCTTAAGACTGAGGTGGTTACGGCGGCGGTGGAAGCCGACGGGAACTGTGGCGGCAGCGGAAATAAGAAAGGGGAGAAGAAGGTGAGGAAACCCAGATATGCTTTTCAGACGAGGAGTCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATATGGTCAAAAAGCAGTAAAAAACAACAAGTTTCCTAGGAGCTATTATCGGTGCACGCATCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGACTAACGAGAGATGAAGGGGTGGTGGTAACGACGTATGAAGGCATGCATACACACTCCATTGATAAACCAACCGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTACAGTACTCCTTTTTGA 519 48.36 MENYQMFFPCSNGGGLSAYSQPDISSGTASDMFRNFHGGDPQASGVLGLKTEVVTAAVEADGNCGGSGNKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3779888 3781650 - CmoCh14G007400.1 Cmo14g00740 396006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00740 172 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 1 167 - -
Cmo14g00740 172 ProSiteProfiles WRKY domain profile. 87 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00740 172 Pfam WRKY DNA -binding domain 93 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00740 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 167 IPR044810 GO:0003700
Cmo14g00740 172 SMART WRKY_cls 92 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00740 172 Gene3D WRKY domain 70 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g00740 172 SUPERFAMILY WRKY DNA-binding domain 84 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01664 Cmo-Chr6:11525088 Cmo14g00740 Cmo-Chr14:3779888 1.52E-19 dispersed
Cmo14g00740 Cmo-Chr14:3779888 Cmo14g01493 Cmo-Chr14:12003302 7.55E-58 dispersed
Cmo04g00767 Cmo-Chr4:3843930 Cmo14g00740 Cmo-Chr14:3779888 4.42E-22 transposed
Cmo11g01607 Cmo-Chr11:11508531 Cmo14g00740 Cmo-Chr14:3779888 1.87E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10974 PF03106 WRKY 3.40E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00740 - - csv:101219349 285.034