Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00777 ATGCTACCGAAATCCACCGGAATCCTTTGGCTTGACGGCGACCATCACGACGGCGCTTCTTGGAACAGAACCAACAACCACAACAACGATGACATCGCTGTTGCTGGCTCCGCTTCCTCCTTCAAATCCATGCTCCAATCCGACTGGTACATGAACTCTACTACTCCTCTGAATCCTTCGAACCAAGATTTTCATTCCCTCTCTTCACACCCCGATGTTCGAGACCTTCCTTTCAACTCCAATCCGCCGGATAACTTGCTCTTACGCCCCATAGATTCTTCCTCTGCCTGTTCTGCATCACAGGCTTTTGCTCTTGATCCTTCCCATTCCCAATCCATGTTGCCTCCTCAGAAATCCTGTTTCCCTTCTCTTTATAACGTTGCTTGTAGCAGTAATTTTGAAAACGGCTTCGATTTGGGCGGTGAGAATGGCCTGCTTGGTTCTTACCAGGGGAACCAAGTTTCGAATTCCTCAGGTATGATGGGATTCAACGGCATTTCGTCTCTTCCTCAAATCGGTAATCAGGAACTAAGCTTAAACAACGCGGAATTTCCGGTCGCTGATAACCCTCCGGCATTCGGCGCTGGATTTAATCCGACGGATGCCTTCGAGAGCTTCGATGGTTGCGGGAATGCTCTGTTTCAGAATAGGTCAAAGGCTTTGAGACCTCCTGAATCGTTCCCTCAGGTCGGCGGCACACAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTTCCGGAGTTGATAAACTAGAGAATTTGGAGGTTTCGGGTTCTAAATTTGGAGACGGCTCAATGTGGATGCCGAATATGGAGAGGCTGATGAAGAACAGCGACGAAGACATTGAGGACGACAGCCTGGATATTTCTCGCTTGAATTACGATTCCGATGAAGCCAATGAGTATAATAAGCTAGAGGACAATGTTAATGCTAAAAACTCCGGAAGCAATTCCAATGCCAACACCACTGTAACTGACGGAAACCAGAAGGGGAAGAGGAAGGGGATGCCGGCGAAAAATCTCATGGCGGAGCGACGGCGGAGAAAGAAGCTGAATGATAGACTCTACATGCTTAGGTCCGTCGTACCCAAAATCAGCAAGATGGATAGAGCTTCAATCCTTGGAGATGCCATTGATTACCTGAAGGAGCTTCTTCAAAAGATAAATGAACTCCATAATGAACTTGAGTCGACTCCTCCTCCTCCTCCTCCTCCTGGTTCTTCGTTGCAGCCTCCTGCAAGCTTTCACCCTTTGACGCCGACGCTGCCGATACCGATGCTGCCGAATCTTCCCTGTCGTGTCAAAGAAGAGCTGTGTCCAAGCTCCATGTCAAGCCCCAAAGCTCAGCCTGCCAGGGTTGAAGTCCGAGCCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCAGGTCTCTTGCTATCCACCATGAAGGCTCTGGACAACCTTGGCTTGGACATCCAACAAGCTGTGATAAGCTGTTTTAATGGATTTGCTTTAGACGTGTTTCGCGCCGAGCAATCCAAGGAAGGCGAGGAGGTCTCACCGGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTGTTTAA 1620 49.32 MLPKSTGILWLDGDHHDGASWNRTNNHNNDDIAVAGSASSFKSMLQSDWYMNSTTPLNPSNQDFHSLSSHPDVRDLPFNSNPPDNLLLRPIDSSSACSASQAFALDPSHSQSMLPPQKSCFPSLYNVACSSNFENGFDLGGENGLLGSYQGNQVSNSSGMMGFNGISSLPQIGNQELSLNNAEFPVADNPPAFGAGFNPTDAFESFDGCGNALFQNRSKALRPPESFPQVGGTQPTLFQKRAAHRVGSSGVDKLENLEVSGSKFGDGSMWMPNMERLMKNSDEDIEDDSLDISRLNYDSDEANEYNKLEDNVNAKNSGSNSNANTTVTDGNQKGKRKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQKINELHNELESTPPPPPPPGSSLQPPASFHPLTPTLPIPMLPNLPCRVKEELCPSSMSSPKAQPARVEVRAREGRAVNIHMFCSRKPGLLLSTMKALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGEEVSPEQIKAVLLDSAGLHGVV 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3943672 3946822 + CmoCh14G007770.1 Cmo14g00777 396043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00777 539 CDD bHLH_AtAMS_like 341 401 - -
Cmo14g00777 539 MobiDBLite consensus disorder prediction 399 418 - -
Cmo14g00777 539 Coils Coil 377 401 - -
Cmo14g00777 539 PANTHER BHLH TRANSCRIPTIONAL FACTOR 95 538 - -
Cmo14g00777 539 ProSiteProfiles ACT domain profile. 467 539 IPR002912 -
Cmo14g00777 539 Gene3D - 329 401 IPR036638 GO:0046983
Cmo14g00777 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 409 IPR036638 GO:0046983
Cmo14g00777 539 MobiDBLite consensus disorder prediction 397 418 - -
Cmo14g00777 539 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 95 538 - -
Cmo14g00777 539 CDD ACT_UUR-ACR-like 468 528 - -
Cmo14g00777 539 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Cmo14g00777 539 MobiDBLite consensus disorder prediction 310 340 - -
Cmo14g00777 539 SMART finulus 344 393 IPR011598 GO:0046983
Cmo14g00777 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Cmo14g00777 539 MobiDBLite consensus disorder prediction 310 332 - -
Cmo14g00777 539 MobiDBLite consensus disorder prediction 60 85 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01574 Cmo14g00777 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00589 Cmo-Chr5:2916192 Cmo14g00777 Cmo-Chr14:3943672 1.38E-31 dispersed
Cmo11g01748 Cmo-Chr11:12328919 Cmo14g00777 Cmo-Chr14:3943672 2.75E-26 dispersed
Cmo13g00860 Cmo-Chr13:7869398 Cmo14g00777 Cmo-Chr14:3943672 1.73E-144 dispersed
Cmo14g00777 Cmo-Chr14:3943672 Cmo18g00238 Cmo-Chr18:1579409 7.57E-152 dispersed
Cmo19g00756 Cmo-Chr19:7694317 Cmo14g00777 Cmo-Chr14:3943672 1.80E-25 dispersed
Cmo17g00078 Cmo-Chr17:418828 Cmo14g00777 Cmo-Chr14:3943672 8.41E-13 transposed
Cmo11g01574 Cmo-Chr11:11313928 Cmo14g00777 Cmo-Chr14:3943672 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10978 PF00010 HLH 2.20E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00777 - - bhj:120082707 796.193