Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00825 ATGCGGATGAGTTGTAATGGATGCCGAGTTCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCACTGGATCAAGAGTCCTGATTCTCAAGCCAACGCTACTGTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGACTCATGAACCTTATCAACGCTGGTCCTGATCATCTCCGTCCTGCAATTTTTAGATCTCTTCTCTATGAGGCTTGTGGACGTATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAACTCTGTCAGGCGGCTGTTGAGGCCGTTCTTAAAGGTGCTCCGATCACGCCGATTAACTCTGAGGCGGCGGCTACTGGCGATGGACCGCCGTTGAAAGCCTACGATATTCGTCACGTTTCCAAGGATGAAAACTCCGCTGCATCTAACGACGGCGGAGTCAACCGGCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCTGCGGTGAAGACGAAAGCGTGTAAAGGAATCTCATCCACCGTGGATGAGTCGACTCGACGACTGTGTTCTATCGAGTTAAACCGATCGTCAAGCGGCGAGTCGTCGTTGAGTCACCAATCCGACTCGCCACATGTTGAAAACGAGAGCAAAGAAACCGATAGCATGATTTCAGTATCGACGGCGAAGTTCTCTCCTCCTCCAGTACTGCCAGTTTTATTCCGATCAGAATCCACTTCCGTACCAAAACGTCCAGGTCACGGCGGCGGCACTGTGCCAATTCCGCAAAGCGAATTAGCTCTAGAACTAACTCTGGGGATGAAGCCGGTGTCACGTGCCGAGCACGTGATTCCAATGAAGAAGCGGAAGATAGAGGCCGACGTTGGGTTGAGGCCCAATAACAACGAGGCGTGCAATACTGTATTGGGCCTTGATTTTGCAGCCTAA 924 51.19 MRMSCNGCRVLRKGCSENCSIRPCLHWIKSPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGVNRRVKTRCRFKRSAVKTKACKGISSTVDESTRRLCSIELNRSSSGESSLSHQSDSPHVENESKETDSMISVSTAKFSPPPVLPVLFRSESTSVPKRPGHGGGTVPIPQSELALELTLGMKPVSRAEHVIPMKKRKIEADVGLRPNNNEACNTVLGLDFAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4272280 4273864 - CmoCh14G008250.1 Cmo14g00825 396091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00825 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 304 - -
Cmo14g00825 307 MobiDBLite consensus disorder prediction 186 202 - -
Cmo14g00825 307 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cmo14g00825 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 304 - -
Cmo14g00825 307 MobiDBLite consensus disorder prediction 186 213 - -
Cmo14g00825 307 PIRSF AS2 1 301 IPR017414 -
Cmo14g00825 307 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01851 Cmo-Chr1:13487541 Cmo14g00825 Cmo-Chr14:4272280 1.53E-48 dispersed
Cmo03g00962 Cmo-Chr3:7221792 Cmo14g00825 Cmo-Chr14:4272280 8.93E-54 dispersed
Cmo07g00669 Cmo-Chr7:3018288 Cmo14g00825 Cmo-Chr14:4272280 8.39E-54 dispersed
Cmo09g00275 Cmo-Chr9:1210913 Cmo14g00825 Cmo-Chr14:4272280 7.36E-48 dispersed
Cmo10g00250 Cmo-Chr10:1112817 Cmo14g00825 Cmo-Chr14:4272280 7.73E-84 dispersed
Cmo11g00273 Cmo-Chr11:1337398 Cmo14g00825 Cmo-Chr14:4272280 2.04E-39 dispersed
Cmo14g00825 Cmo-Chr14:4272280 Cmo18g01029 Cmo-Chr18:11077585 2.25E-66 dispersed
Cmo01g00405 Cmo-Chr1:1979705 Cmo14g00825 Cmo-Chr14:4272280 7.05E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10982 PF03195 LOB 2.60E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00825 - - csv:101208245 513.072