Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00852 ATGGAGAATTTAATGGGTCTGCTCAGAATCCATGTCTTTAAAGGTGTCAATCTTGCTGTAAGAGACGTTGTTAGCAGTGATCCATATGTCGTTTTCAAGATGGGCAAACAGAAGTTGAAGACTCGAGTAGTGAAACAAAATATCAACCCAGAGTGGAACGAAGATCTAACTCTATCGGTCCAAGATCCAAATCTTCCCGTCTACTTGATTGTATACGACAAAGACAAGTTCTCGTTCGATGATAGGATGGGGGACGCGGAGTTCGACGTTCGACCGTTCATGGAGGCGGTGAAGATGAGATTGAACAACCTACCAAATGGAACCATCATAAGGAAGGTTCAACCAAGTAGGGAGAATTGCTTGTCTGAAGAGAGTTGCATAGTTTGGGGAAATGGTCAAGTTAGTCAAAGAATGTTTCTAAGGCTAAGAAATGTGGAGTCTGGTGAAGTTGAGCTGCAATTGCAATGGATTGATATTCCTGGCTCTAGGGGTATACATTAA 501 42.51 MENLMGLLRIHVFKGVNLAVRDVVSSDPYVVFKMGKQKLKTRVVKQNINPEWNEDLTLSVQDPNLPVYLIVYDKDKFSFDDRMGDAEFDVRPFMEAVKMRLNNLPNGTIIRKVQPSRENCLSEESCIVWGNGQVSQRMFLRLRNVESGEVELQLQWIDIPGSRGIH 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4511055 4512222 + CmoCh14G008520.1 Cmo14g00852 396118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00852 166 Pfam C2 domain 6 93 IPR000008 -
Cmo14g00852 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
Cmo14g00852 166 SMART C2_3c 7 102 IPR000008 -
Cmo14g00852 166 Gene3D C2 domain 4 161 IPR035892 -
Cmo14g00852 166 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cmo14g00852 166 CDD C2_ArfGAP 6 148 - -
Cmo14g00852 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 105 IPR035892 -
Cmo14g00852 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 1-LIKE 1 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00353 Cmo-Chr10:1600544 Cmo14g00852 Cmo-Chr14:4511055 2.10E-83 dispersed
Cmo13g01025 Cmo-Chr13:8651244 Cmo14g00852 Cmo-Chr14:4511055 1.83E-78 dispersed
Cmo14g00852 Cmo-Chr14:4511055 Cmo18g00057 Cmo-Chr18:373965 6.16E-82 dispersed
Cmo03g00620 Cmo-Chr3:5772936 Cmo14g00852 Cmo-Chr14:4511055 8.83E-45 transposed
Cmo01g00380 Cmo-Chr1:1849933 Cmo14g00852 Cmo-Chr14:4511055 2.11E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00852 - - csv:101218477 305.449