Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00962 ATGGAGGAGGTGAAGAAGAAGAAAAAGGAAGAGATTATCAAGTCGGAGGACACTAGCACAAGCGGCGGCGGCGGTGGGATTTTCCCATTTTCCGGTAACATGAAATCAAACGGATTCTTCGATTTCCCAGATGGTGAAAAATGTTCTGTTGGCTTCCTGGAGCTGCTTGGTCTTAATAATCATGAAGTCAAGGGCTATTCTTCCCAGGTTTTGAATCCTCCGGCCACCCCCAATTGTTCCTCCTCCGTCTCTTCCGCCTCTACCGACGCCGTTAACGACAACCCCACCGCCGCCCACGACAACCCACAACAACAACAAAATCCCACTAAAAAATTGAAGAAGAAGAAGGAGAAGAGAGAGAAGGAGGGAAGATTTGCATTCATGACGAAGAGTGAAGTGGATCATCTAGAAGATGGGTATCGATGGAGGAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCCAGGAGCTATTATCGGTGTACCACTCCAACATGCAATGTGAAGAAGAGAGTGGAGCGATGTTCCAATGATCCAACCATCCTGGTCACCACCTACGAAGGCCAACACACTCACCCAACCCCAATCCTTCTTCCACCCCCGCTATCCACTCCACCCTGCATCCATCTTCCACCCATGCCTTGCCTTCCACCTGCCAACAACAATCATGATGGCGACATTAGTGGAGCGATGTGGGATGAGTACACACAAAACCCGGCGTTGTTGAATTCCCAGCATTTAGAAGCGAATTACAACATAAACAACCTCATAGGAGCAAGGAAGGCGGCGGCCGGAATGCTGCAGCAGAAACGGTTGTGCAACCCAAATGCTACATTTCTGGTAGATCACGGGCTGCTTCAAGATGTGATTCCTGCCCACATGCTCAAACAGGAGTGA 900 49.33 MEEVKKKKKEEIIKSEDTSTSGGGGGIFPFSGNMKSNGFFDFPDGEKCSVGFLELLGLNNHEVKGYSSQVLNPPATPNCSSSVSSASTDAVNDNPTAAHDNPQQQQNPTKKLKKKKEKREKEGRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTPTCNVKKRVERCSNDPTILVTTYEGQHTHPTPILLPPPLSTPPCIHLPPMPCLPPANNNHDGDISGAMWDEYTQNPALLNSQHLEANYNINNLIGARKAAAGMLQQKRLCNPNATFLVDHGLLQDVIPAHMLKQE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5136664 5138711 + CmoCh14G009620.1 Cmo14g00962 396228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00962 299 ProSiteProfiles WRKY domain profile. 131 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00962 299 SMART WRKY_cls 136 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00962 299 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 62 220 - -
Cmo14g00962 299 MobiDBLite consensus disorder prediction 74 123 - -
Cmo14g00962 299 MobiDBLite consensus disorder prediction 1 16 - -
Cmo14g00962 299 MobiDBLite consensus disorder prediction 74 108 - -
Cmo14g00962 299 Gene3D WRKY domain 121 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g00962 299 Pfam WRKY DNA -binding domain 137 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00962 299 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 220 IPR044810 GO:0003700
Cmo14g00962 299 MobiDBLite consensus disorder prediction 1 29 - -
Cmo14g00962 299 SUPERFAMILY WRKY DNA-binding domain 128 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00287 Cmo14g00962 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00962 Cmo-Chr14:5136664 Cmo06g01565 Cmo-Chr6:11028323 1.57E-45 dispersed
Cmo01g00287 Cmo-Chr1:1364234 Cmo14g00962 Cmo-Chr14:5136664 2.84E-89 wgd
Cmo14g00962 Cmo-Chr14:5136664 Cmo17g00367 Cmo-Chr17:2255107 1.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10996 PF03106 WRKY 9.70E-27 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00962 - - cmo:103489912 314.694