Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00981 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGAGTAGCATGGACTTGAGGGCTGCTGTTGGTAAGCGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTACACCATTAAACACTGTGGAATCTGATCATTTGAACAGGCAGCTATTTCCAATTGTCTCTGGGATTCCCTTGACAACAGGGGGCTCTTCGAACAGTTCTTCGTCTTGCTCTGATGAAGCTAATATGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAACGGAGGAGGATTAGTGGTATAGAAGATGAGAATCTTAATGATGAAGCGCGTAGTTTGAGTTTGAAGATTGGTGGAAATGTTTCTCAGATTGTTGAGAGAGATGCTGGGAGTTGGGAAGGGAGTAGTGGGAAGAAGAGTAAGTTGGGTGGGGGAGCTTCAAATCGTGCTGTTTGTCAAGTAGAAGATTGTGGAGCTGATCTGAGCAATGCAAAAGAGTATCATAGACGACATAAAGTTTGTGAAACGCATTCTAAGGCGAGTAATGCGCTTGTTGCTAATGTATTGCAGCGATTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGAAGTTGCCGCAGGCGTTTGGCTGGCCACAATAAGCGCAGAAGAAAAATTAATCCGGATACTGTTGTGAATGGAAACTCTCCACCTGATGAGCAGACTACCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAACCCTTGCCTGCCAATCTAGTGAACATGGGGGAAAGAACCTAACTGGGATTCTGCATGAACCACAGAAATTGCTGAACAATGGGGCATTGATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTCCACCGGTACCGTTGAGGTCGTCGAAACAACACGACACGATACCTATATCTGAGGCACCAGTACAAGCCATTGGTAGGGGTGGAGATACACCAGCTGTATCTTGTATTAAACCAAGCACTTCAAACAGCCCTCCTGCATATTCAGAAATCAGGGACAGTCAAGTTGGGCAATGCAAAATGATGAACTTTGATCTAAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAACTATTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTAGATTGGTTATCACACAGTCCTACAGAGATTGAGAGCTATATCAGACCTGGTTGTGTTGTTCTAACCGTATACACACGACAGACCGAGGCTGCTTGGGACGATCTTTGCCATGACCTCAGTACCAGTTTCAATAGCCTTTTCGATGTTTCGGACGATGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCAAGGTCGGGTCGTGGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTGAACCCAGTGGCTGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAAGAAACTTGAGACAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACCCAGGAAGCTTCTGATGAGCCAACCGAATGTGATGATAACTCGAACGCGCAAGATGACAGTCGATGTATTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGATTTAGCAGCAGCTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATTTGCACACTTCAGAGTGCATTAGAATTGACCGAAACATGTTCGAATTCCGGGGAAACGGAAGAACTGGAAGGAAGGAGTAATGCAATGGAGTTCATTCATGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTGACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCGCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATGTTCTTCTTGATGGGACCGTGGATGCTGGAGGTCACTCATCCTTGAATCTTGCATTGATGGATATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTGGAGCTCCTTTTGGTATATCCCTCAAAAGTGAAGGATACATCAAGTGCTGATAGCTTCTTGTTTAGACCGAATGTCGTAGGCCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGACGACTCCGAGGACGTTCTCGATGCATTAACTAACGACCCCGGAATGGTAAGGATTGACAGTGTGCTTTCTGATATATGGTTTGCATCAGTCATGTCATGTCACTTTATTGTGGGAGTTGAGGCTTGGAAGAGCGCTCGAGACAGCACGGGGTCAACACCGGAGGATTACGCGCGTTTACGTGGGCATTACTCGTATATTCGACTTGTGCAGAGAAAAATAAACAAGAGATCTGCAGCAGCTGAGCATGTAGTGGTGGAGATTCCTCCTAGTAGTGTATCAGATGGTAGGTGGAATGAGAAGCAGAACACTGATATGAGCTCATCCAGGTTTGAGATTGGTAGGACAGAAGTAAAACATTGCAGGCAGTGTGTGAGAAAACCGGTGCGTTGTGGAACATCATCGAGCGCGTCTCTGGTGTACAGACCGGCGATGCTTTCGATGGTGGCGATTGCTGCTGTGTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTGTACGTGTTCCGACCGTTCCGATGGGAACTGTTAGATTATGGTACTAAAACTGCAGGTAGAGAGTGTGTGTGTTTGTTCACTGGACAACGATCCCTGGGTGGTCGACTCGAACCCGAACCCGAACCCCTACCGAGGAGCTTCCAAAAGGTGGTTTTCATCGTAACAAATCTCATTTTGTAG 3153 45.35 MEAGYGGEACQLYGMSSMDLRAAVGKRSLEWDLNDWKWDGDLFIATPLNTVESDHLNRQLFPIVSGIPLTTGGSSNSSSSCSDEANMGIEKGKREVEKRRRISGIEDENLNDEARSLSLKIGGNVSQIVERDAGSWEGSSGKKSKLGGGASNRAVCQVEDCGADLSNAKEYHRRHKVCETHSKASNALVANVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDTVVNGNSPPDEQTTNGSNQTTDQDLLSHLIRTLACQSSEHGGKNLTGILHEPQKLLNNGALIGKSDLVSTFLSNGPPVPLRSSKQHDTIPISEAPVQAIGRGGDTPAVSCIKPSTSNSPPAYSEIRDSQVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYTRQTEAAWDDLCHDLSTSFNSLFDVSDDAFWRTGWVYVRVQHQIAFVYQGRVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAIFSVKGRNLRQPTTRLLCAIEGKYLTQEASDEPTECDDNSNAQDDSRCITFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCSEICTLQSALELTETCSNSGETEELEGRSNAMEFIHEIGWLFHRNQLKSRLGDLDPNENLFSLPRFKWLMEFAMDHDWCAVVKKLLDVLLDGTVDAGGHSSLNLALMDMSLLHRAVRKNSRSLVELLLVYPSKVKDTSSADSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVRIDSVLSDIWFASVMSCHFIVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAAEHVVVEIPPSSVSDGRWNEKQNTDMSSSRFEIGRTEVKHCRQCVRKPVRCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTKTAGRECVCLFTGQRSLGGRLEPEPEPLPRSFQKVVFIVTNLIL 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5243293 5249863 - CmoCh14G009810.1 Cmo14g00981 396247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00981 1050 MobiDBLite consensus disorder prediction 220 254 - -
Cmo14g00981 1050 MobiDBLite consensus disorder prediction 233 254 - -
Cmo14g00981 1050 Gene3D - 733 910 IPR036770 -
Cmo14g00981 1050 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 859 1006 IPR044817 GO:0003677
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 842 IPR044817 GO:0003677
Cmo14g00981 1050 SUPERFAMILY Ankyrin repeat 760 892 IPR036770 -
Cmo14g00981 1050 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 859 1006 - -
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 842 - -
Cmo14g00981 1050 SUPERFAMILY SBT domain 154 236 IPR036893 GO:0003677|GO:0005634
Cmo14g00981 1050 MobiDBLite consensus disorder prediction 404 439 - -
Cmo14g00981 1050 Pfam SBP domain 156 229 IPR004333 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00273 Cmo14g00981 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02108 Cmo-Chr1:14584798 Cmo14g00981 Cmo-Chr14:5243293 5.00E-34 dispersed
Cmo06g01456 Cmo-Chr6:10498923 Cmo14g00981 Cmo-Chr14:5243293 2.41E-21 dispersed
Cmo09g00010 Cmo-Chr9:64679 Cmo14g00981 Cmo-Chr14:5243293 7.50E-37 dispersed
Cmo11g01997 Cmo-Chr11:13677663 Cmo14g00981 Cmo-Chr14:5243293 9.06E-37 dispersed
Cmo14g00981 Cmo-Chr14:5243293 Cmo14g01695 Cmo-Chr14:13325908 5.24E-22 dispersed
Cmo08g00833 Cmo-Chr8:5352841 Cmo14g00981 Cmo-Chr14:5243293 6.97E-36 transposed
Cmo01g00273 Cmo-Chr1:1270820 Cmo14g00981 Cmo-Chr14:5243293 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10998 PF03110 SBP 8.50E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00981 - - csv:101203103 1723.75