Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00981 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGAGTAGCATGGACTTGAGGGCTGCTGTTGGTAAGCGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTACACCATTAAACACTGTGGAATCTGATCATTTGAACAGGCAGCTATTTCCAATTGTCTCTGGGATTCCCTTGACAACAGGGGGCTCTTCGAACAGTTCTTCGTCTTGCTCTGATGAAGCTAATATGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAACGGAGGAGGATTAGTGGTATAGAAGATGAGAATCTTAATGATGAAGCGCGTAGTTTGAGTTTGAAGATTGGTGGAAATGTTTCTCAGATTGTTGAGAGAGATGCTGGGAGTTGGGAAGGGAGTAGTGGGAAGAAGAGTAAGTTGGGTGGGGGAGCTTCAAATCGTGCTGTTTGTCAAGTAGAAGATTGTGGAGCTGATCTGAGCAATGCAAAAGAGTATCATAGACGACATAAAGTTTGTGAAACGCATTCTAAGGCGAGTAATGCGCTTGTTGCTAATGTATTGCAGCGATTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGAAGTTGCCGCAGGCGTTTGGCTGGCCACAATAAGCGCAGAAGAAAAATTAATCCGGATACTGTTGTGAATGGAAACTCTCCACCTGATGAGCAGACTACCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAACCCTTGCCTGCCAATCTAGTGAACATGGGGGAAAGAACCTAACTGGGATTCTGCATGAACCACAGAAATTGCTGAACAATGGGGCATTGATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTCCACCGGTACCGTTGAGGTCGTCGAAACAACACGACACGATACCTATATCTGAGGCACCAGTACAAGCCATTGGTAGGGGTGGAGATACACCAGCTGTATCTTGTATTAAACCAAGCACTTCAAACAGCCCTCCTGCATATTCAGAAATCAGGGACAGTCAAGTTGGGCAATGCAAAATGATGAACTTTGATCTAAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGCATCATTTTGAAACTATTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTAGATTGGTTATCACACAGTCCTACAGAGATTGAGAGCTATATCAGACCTGGTTGTGTTGTTCTAACCGTATACACACGACAGACCGAGGCTGCTTGGGACGATCTTTGCCATGACCTCAGTACCAGTTTCAATAGCCTTTTCGATGTTTCGGACGATGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCAAGGTCGGGTCGTGGTTGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTAGAATCACAAGTGTGAACCCAGTGGCTGTTTCTACATCTAAGAAGGCTATATTTTCAGTTAAAGGAAGAAACTTGAGACAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACCCAGGAAGCTTCTGATGAGCCAACCGAATGTGATGATAACTCGAACGCGCAAGATGACAGTCGATGTATTACCTTTTCCTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGATTTAGCAGCAGCTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATTTGCACACTTCAGAGTGCATTAGAATTGACCGAAACATGTTCGAATTCCGGGGAAACGGAAGAACTGGAAGGAAGGAGTAATGCAATGGAGTTCATTCATGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTGACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCGCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTGGATGTTCTTCTTGATGGGACCGTGGATGCTGGAGGTCACTCATCCTTGAATCTTGCATTGATGGATATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTGGAGCTCCTTTTGGTATATCCCTCAAAAGTGAAGGATACATCAAGTGCTGATAGCTTCTTGTTTAGACCGAATGTCGTAGGCCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGACGACTCCGAGGACGTTCTCGATGCATTAACTAACGACCCCGGAATGGTAAGGATTGACAGTGTGCTTTCTGATATATGGTTTGCATCAGTCATGTCATGTCACTTTATTGTGGGAGTTGAGGCTTGGAAGAGCGCTCGAGACAGCACGGGGTCAACACCGGAGGATTACGCGCGTTTACGTGGGCATTACTCGTATATTCGACTTGTGCAGAGAAAAATAAACAAGAGATCTGCAGCAGCTGAGCATGTAGTGGTGGAGATTCCTCCTAGTAGTGTATCAGATGGTAGGTGGAATGAGAAGCAGAACACTGATATGAGCTCATCCAGGTTTGAGATTGGTAGGACAGAAGTAAAACATTGCAGGCAGTGTGTGAGAAAACCGGTGCGTTGTGGAACATCATCGAGCGCGTCTCTGGTGTACAGACCGGCGATGCTTTCGATGGTGGCGATTGCTGCTGTGTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTGTACGTGTTCCGACCGTTCCGATGGGAACTGTTAGATTATGGTACTAAAACTGCAGGTAGAGAGTGTGTGTGTTTGTTCACTGGACAACGATCCCTGGGTGGTCGACTCGAACCCGAACCCGAACCCCTACCGAGGAGCTTCCAAAAGGTGGTTTTCATCGTAACAAATCTCATTTTGTAG 3153 45.35 MEAGYGGEACQLYGMSSMDLRAAVGKRSLEWDLNDWKWDGDLFIATPLNTVESDHLNRQLFPIVSGIPLTTGGSSNSSSSCSDEANMGIEKGKREVEKRRRISGIEDENLNDEARSLSLKIGGNVSQIVERDAGSWEGSSGKKSKLGGGASNRAVCQVEDCGADLSNAKEYHRRHKVCETHSKASNALVANVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDTVVNGNSPPDEQTTNGSNQTTDQDLLSHLIRTLACQSSEHGGKNLTGILHEPQKLLNNGALIGKSDLVSTFLSNGPPVPLRSSKQHDTIPISEAPVQAIGRGGDTPAVSCIKPSTSNSPPAYSEIRDSQVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYTRQTEAAWDDLCHDLSTSFNSLFDVSDDAFWRTGWVYVRVQHQIAFVYQGRVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAIFSVKGRNLRQPTTRLLCAIEGKYLTQEASDEPTECDDNSNAQDDSRCITFSCSIPVVYGRGFIEVEDDGFSSSFFPFIVAEEDVCSEICTLQSALELTETCSNSGETEELEGRSNAMEFIHEIGWLFHRNQLKSRLGDLDPNENLFSLPRFKWLMEFAMDHDWCAVVKKLLDVLLDGTVDAGGHSSLNLALMDMSLLHRAVRKNSRSLVELLLVYPSKVKDTSSADSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVRIDSVLSDIWFASVMSCHFIVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAAEHVVVEIPPSSVSDGRWNEKQNTDMSSSRFEIGRTEVKHCRQCVRKPVRCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTKTAGRECVCLFTGQRSLGGRLEPEPEPLPRSFQKVVFIVTNLIL 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5243293 5249863 - CmoCh14G009810.1 Cmo14g00981 396247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00981 1050 MobiDBLite consensus disorder prediction 220 254 - -
Cmo14g00981 1050 MobiDBLite consensus disorder prediction 233 254 - -
Cmo14g00981 1050 Gene3D - 733 910 IPR036770 -
Cmo14g00981 1050 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 859 1006 IPR044817 GO:0003677
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 842 IPR044817 GO:0003677
Cmo14g00981 1050 SUPERFAMILY Ankyrin repeat 760 892 IPR036770 -
Cmo14g00981 1050 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 859 1006 - -
Cmo14g00981 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 842 - -
Cmo14g00981 1050 SUPERFAMILY SBT domain 154 236 IPR036893 GO:0003677|GO:0005634
Cmo14g00981 1050 MobiDBLite consensus disorder prediction 404 439 - -
Cmo14g00981 1050 Pfam SBP domain 156 229 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00981 - - - csv:101203103 1723.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00273 Cmo14g00981 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02108 Cmo-Chr1:14584798 Cmo14g00981 Cmo-Chr14:5243293 5.00E-34 dispersed
Cmo06g01456 Cmo-Chr6:10498923 Cmo14g00981 Cmo-Chr14:5243293 2.41E-21 dispersed
Cmo09g00010 Cmo-Chr9:64679 Cmo14g00981 Cmo-Chr14:5243293 7.50E-37 dispersed
Cmo11g01997 Cmo-Chr11:13677663 Cmo14g00981 Cmo-Chr14:5243293 9.06E-37 dispersed
Cmo14g00981 Cmo-Chr14:5243293 Cmo14g01695 Cmo-Chr14:13325908 5.24E-22 dispersed
Cmo08g00833 Cmo-Chr8:5352841 Cmo14g00981 Cmo-Chr14:5243293 6.97E-36 transposed
Cmo01g00273 Cmo-Chr1:1270820 Cmo14g00981 Cmo-Chr14:5243293 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50670 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50670 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50670 64.1 4.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10998 PF03110 SBP 8.50E-30 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g00981 Cmo_Chr14 FPKM 2.010606 2.801283 2.148994 2.732021 4.68084 4.705647 5.61503 1.712867 1.360448 1.646769