Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00983 ATGAGCTGCTTTAGCTGCTGTGAGGAAGATGAAATTCAGAAAGCAGCTGACCATGGAGGCATGTATGCAGCAAAACAGAATATAGGAAACAATGGAGGTTATCAAAATACAGAAGCTGCACCAGCAGTTACTCAGGCTGTCAAAATGCAACCAATTTTAGTGCCTACCATACCCATCGAAGAACTGTCGGAAGTAACCGACAACTTTGGAAATGAAGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGGTGCTTAAAAACGAGCAGCGTGCTGCAATCAAGAAGTTGGATGCTAGCAAACAGCCTAATGATGAGTTTTTAGCACAGGTCTCCATGGTATCGAGGCTGAAGCATGGAAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGGAATTCCCGAATACTTGCATACGAGTATGCTTCTAATGGATCACTTCATGATATTCTTCATGGTACATATAATCATGCGAAAACTTTGTTGGTCAAAAGCTTTAGAAGTTTATATTTAATTTCTGTTCCTGTACATGTATATCAAGACAGCTACGGCCAAAATGCCTTTCACTGTTTTCCAAGAAGAAAAGGAGTGAAAGGAGCACAGCCAGGTCCTGTTCTATCATGGGCACAACGTGTGAAAATCGCTGTCGGGGCTGCAAGAGGACTTGAGTATTTGCATGAAAAGGCTGAGACCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATCGCCGACTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCTACTCGTGTTCTTGGAACTTTTGGTTACCATGCTCCTGAATATGCTATGACTGGTCAATTGAATGCCAAGAGTGATGTATATAGCTTTGGTGTAGTCTTGCTTGAACTTCTGACAGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGTGTCGATGGAAGGCTTGGCGGAGACTACCCTCCAAAGGCTGTAGCAAAGGTAATTCGAATAATGCTTAAGCAATTCTCCATTTCTTTTTTGAATTGGCAGAGTTTGAGCATTTTAGTTCTGGTCTGTGCTCATCTGATGCATTTAGAATTCATTCAAAAGCTTCTTGTAGATGCTAAATTGTTTATCAACCCAATATCAGGAAGACAAATTAAAAGAAATCTGAGGATCTTGCCATATTTTACTAGCTATAACAAGAATCTGTATCTAATACCGGATGCAACTTTACTGCAGTTAGCAGCTGTTGCTGCCCTGTGTGTGCAGTATGAAGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATTTATTAAATGCCCGACCCGTGCCTTCCGGTGACTCGTCAAACTCATAA 1452 41.74 MSCFSCCEEDEIQKAADHGGMYAAKQNIGNNGGYQNTEAAPAVTQAVKMQPILVPTIPIEELSEVTDNFGNEALIGEGSYGRVYYGVLKNEQRAAIKKLDASKQPNDEFLAQVSMVSRLKHGNFVQLLGYCVDGNSRILAYEYASNGSLHDILHGTYNHAKTLLVKSFRSLYLISVPVHVYQDSYGQNAFHCFPRRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAETHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDGRLGGDYPPKAVAKVIRIMLKQFSISFLNWQSLSILVLVCAHLMHLEFIQKLLVDAKLFINPISGRQIKRNLRILPYFTSYNKNLYLIPDATLLQLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPVPSGDSSNS 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5263303 5266557 + CmoCh14G009830.1 Cmo14g00983 396249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00983 483 Gene3D Phosphorylase Kinase; domain 1 31 143 - -
Cmo14g00983 483 SMART serkin_6 69 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00983 483 Pfam Protein tyrosine and serine/threonine kinase 74 365 IPR001245 GO:0004672|GO:0006468
Cmo14g00983 483 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 156 - -
Cmo14g00983 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Cmo14g00983 483 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 434 477 - -
Cmo14g00983 483 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 195 363 - -
Cmo14g00983 483 Gene3D Transferase(Phosphotransferase) domain 1 199 372 - -
Cmo14g00983 483 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cmo14g00983 483 SUPERFAMILY Protein kinase-like (PK-like) 50 366 IPR011009 -
Cmo14g00983 483 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 156 - -
Cmo14g00983 483 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 434 477 - -
Cmo14g00983 483 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 195 363 - -
Cmo14g00983 483 ProSiteProfiles Protein kinase domain profile. 69 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00489 Cmo14g00983 CCT
Cmo01g00271 Cmo14g00983 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00983 Cmo-Chr14:5263303 Cmo17g00572 Cmo-Chr17:5867772 1.58E-142 dispersed
Cmo01g00271 Cmo-Chr1:1260939 Cmo14g00983 Cmo-Chr14:5263303 4.14E-14 wgd
Cmo14g00983 Cmo-Chr14:5263303 Cmo17g00968 Cmo-Chr17:8483250 1.18E-12 wgd
Cmo14g00983 Cmo-Chr14:5263303 Cmo08g00489 Cmo-Chr8:3011861 5.48E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74841 PF07714 PK_Tyr_Ser-Thr 7.20E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00983 K13436 - csv:101223136 599.742